Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   JCM16456_RS14260 Genome accession   NZ_AP014635
Coordinates   3200701..3201708 (-) Length   335 a.a.
NCBI ID   WP_068715465.1    Uniprot ID   -
Organism   Vibrio tritonius strain AM2     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3195701..3206708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCM16456_RS14235 rraA 3196348..3196872 (-) 525 WP_068715455.1 ribonuclease E activity regulator RraA -
  JCM16456_RS14240 - 3196947..3197864 (-) 918 WP_068715457.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  JCM16456_RS14245 hslU 3197970..3199301 (-) 1332 WP_068715459.1 HslU--HslV peptidase ATPase subunit -
  JCM16456_RS14250 hslV 3199343..3199909 (-) 567 WP_068715460.1 ATP-dependent protease subunit HslV -
  JCM16456_RS14255 - 3200036..3200581 (-) 546 WP_068715463.1 SPOR domain-containing protein -
  JCM16456_RS14260 cytR 3200701..3201708 (-) 1008 WP_068715465.1 DNA-binding transcriptional regulator CytR Regulator
  JCM16456_RS14265 priA 3202020..3204224 (-) 2205 WP_068715467.1 primosomal protein N' -
  JCM16456_RS14270 rpmE 3204533..3204751 (+) 219 WP_068715469.1 50S ribosomal protein L31 -
  JCM16456_RS14275 - 3205030..3206307 (+) 1278 WP_068715471.1 malic enzyme-like NAD(P)-binding protein -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36808.41 Da        Isoelectric Point: 6.4960

>NTDB_id=66416 JCM16456_RS14260 WP_068715465.1 3200701..3201708(-) (cytR) [Vibrio tritonius strain AM2]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRVAEIAGPESAALCSFRHQGYQQALRRAGITMNPTYCVSGDFSFAAGAKLVKQLLALPEPPTA
IFCHNDTMAIGAMQQAKRLGLRVPQDLSVVGFDDIQFAEYSDPPLTTISQPRYEIGRQAMLMMLELLRGHDVQAGSRLLE
TKLVIRESAAPPRIR

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=66416 JCM16456_RS14260 WP_068715465.1 3200701..3201708(-) (cytR) [Vibrio tritonius strain AM2]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTCTCAACAGCGACGGTCTCCCGCGCTTTGATGAATCCAGAAAA
AGTCTCATCTTCCACTCGTAAGCGTGTAGAAGATGCGGTTTTAGAAGCGGGCTATTCTCCCAACTCTTTAGCGAGAAATC
TGCGCCGTAATGAGTCTAAAACGATCGTTGCGATTGTGCCTGATATCTGTGACCCCTATTTTACAGAGATCATTCGCGGT
ATCGAAGACGCCGCGATGGAGCACGGTTATTTAGTGTTGTTAGGAGATAGTGGTCAGCAGAAAAAGCGGGAAAATTCATT
CGTCAATCTTGTCTTTACCAAACAGGCCGATGGTATGTTGCTGTTGGGGACAGATCTTCCTTTTGATGTAAGCAAGCCAG
AGCAGAAAAACTTGCCACCTATGGTGATGGCGTGTGAGTTCGCACCTGAACTTGAATTGCCTACTGTTCACATCGATAAC
TTGACTTCGGCGTTTGAAGCAGTGAATTACCTCACACAAATGGGTCATAAACGAGTGGCAGAGATTGCTGGACCAGAAAG
TGCAGCGTTATGTTCATTCCGTCATCAAGGTTATCAGCAGGCTCTGCGTCGAGCTGGTATCACCATGAACCCAACCTATT
GCGTGTCTGGTGATTTCTCTTTTGCTGCTGGTGCTAAGTTGGTGAAACAGTTATTGGCGTTACCAGAGCCACCAACCGCC
ATTTTCTGTCATAACGACACCATGGCGATAGGGGCTATGCAACAAGCCAAGCGTTTAGGTTTACGAGTACCGCAAGACCT
TTCTGTGGTTGGTTTTGATGATATTCAATTTGCAGAATACAGTGATCCACCATTGACGACCATTTCTCAGCCTCGTTATG
AGATTGGACGTCAGGCAATGCTCATGATGCTGGAACTGCTTCGCGGCCATGATGTGCAAGCTGGTTCGCGTTTACTGGAA
ACCAAATTGGTTATCCGTGAAAGTGCAGCACCACCGCGAATTCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

93.072

99.104

0.922
  cytR Vibrio parahaemolyticus RIMD 2210633

88.589

99.403

0.881

Multiple sequence alignment