Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG762_RS31675 Genome accession   NZ_CP108632
Coordinates   6915542..6916750 (+) Length   402 a.a.
NCBI ID   WP_405882748.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01136     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6910542..6921750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG762_RS31660 (OG762_31775) - 6912479..6913897 (+) 1419 WP_405882746.1 sugar porter family MFS transporter -
  OG762_RS31665 (OG762_31780) - 6914004..6914987 (-) 984 WP_405882747.1 LLM class flavin-dependent oxidoreductase -
  OG762_RS31670 (OG762_31785) - 6915119..6915379 (+) 261 WP_405889287.1 hypothetical protein -
  OG762_RS31675 (OG762_31790) pilA 6915542..6916750 (+) 1209 WP_405882748.1 signal recognition particle-docking protein FtsY Machinery gene
  OG762_RS31680 (OG762_31795) - 6916912..6917574 (-) 663 WP_405882749.1 bifunctional DNA primase/polymerase -
  OG762_RS31685 (OG762_31800) - 6918033..6919508 (+) 1476 WP_405888707.1 hypothetical protein -
  OG762_RS31690 (OG762_31805) - 6919846..6921183 (+) 1338 WP_405888708.1 ammonium transporter -
  OG762_RS31695 (OG762_31810) - 6921180..6921518 (+) 339 WP_054235369.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 42571.66 Da        Isoelectric Point: 4.3954

>NTDB_id=664135 OG762_RS31675 WP_405882748.1 6915542..6916750(+) (pilA) [Streptomyces sp. NBC_01136]
METVILAVVIAVVVIGALGGLVIGSRRKKPLPPAPPTTPDITAPPAEPHVGDEAETPRDEPRRTIEEVDLPDGSAAPVVV
EEPESIVEAPAIEIPEPTAGRLVRLRARLSRSQNALGKGLLTLLSREHLDEDTWEEVEDTLLTADVGVQPTQELVERLRE
RVKVLGTRSPDELRSLLREELLQLLVPEFDRAVKTDSNLDTPGIVMVVGVNGTGKTTTTGKLARVLVADGKNVVLGAADT
FRAAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIEEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHAPLD
EVLLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGADDLAPFEPEAFVDALI
GE

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=664135 OG762_RS31675 WP_405882748.1 6915542..6916750(+) (pilA) [Streptomyces sp. NBC_01136]
ATGGAAACCGTCATCCTTGCTGTAGTCATCGCCGTGGTCGTGATCGGCGCACTCGGCGGGCTCGTCATCGGCAGTCGCCG
CAAGAAGCCGCTGCCCCCGGCGCCCCCCACGACGCCCGACATCACCGCCCCTCCGGCCGAGCCGCACGTCGGCGACGAGG
CCGAGACGCCGCGCGACGAACCGCGCCGGACGATAGAGGAGGTGGATCTCCCGGACGGCTCGGCGGCGCCGGTCGTCGTC
GAGGAGCCCGAATCCATTGTCGAAGCTCCCGCGATCGAGATCCCGGAGCCGACCGCCGGGCGCCTCGTGCGGCTGCGTGC
CCGCCTCTCCCGCTCGCAGAACGCGCTCGGGAAGGGACTGCTCACGCTGCTCTCGCGCGAGCACCTCGACGAGGACACCT
GGGAGGAGGTCGAGGACACGCTGCTCACCGCCGATGTCGGCGTGCAGCCCACCCAGGAGCTGGTCGAGCGGCTGCGTGAG
CGCGTGAAGGTGCTCGGTACGCGGTCGCCGGACGAGCTGCGCTCCCTGCTGCGCGAGGAGCTGCTCCAGCTGCTCGTCCC
CGAGTTCGACCGCGCGGTCAAGACCGACTCGAATCTCGACACCCCGGGCATCGTGATGGTCGTCGGCGTCAACGGCACCG
GGAAGACCACCACCACCGGCAAGCTCGCCCGCGTGCTCGTCGCCGACGGCAAGAACGTGGTGCTCGGCGCCGCCGACACC
TTCCGTGCCGCCGCCGCCGACCAGCTGCAGACCTGGGGCGAGCGCGTCGGCGCCCGCACCGTGCGCGGACCCGAGGGCGG
CGACCCCGCCTCGATCGCCTTCGACGCGGTCAAGGAGGGCATCGAGGAGGGCGCGGACGTCGTCCTCATCGACACCGCCG
GGCGCCTGCACACCAAGACCGGCCTCATGGACGAGCTCGGCAAGGTCAAGCGTGTCGTGGAGAAGCACGCCCCGCTCGAC
GAGGTGCTGCTCGTCCTGGACGCCACGACCGGCCAGAACGGTCTGGTTCAGGCCCGCGTCTTCGCCGAGGTCGTCGACAT
CACCGGCATCGTGCTGACCAAGCTCGACGGCACCGCGAAGGGCGGCATCGTGATCGCGGTCCAGCGCGAGCTGGGCGTGC
CGGTCAAGCTGGTGGGTCTGGGCGAGGGCGCGGACGACTTGGCGCCGTTCGAGCCCGAAGCATTCGTGGATGCGCTCATT
GGCGAGTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(116-181)

SRP54-type protein, GTPase domain (SRP54)

(204-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.407

86.816

0.368