Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MOO45_RS01560 Genome accession   NZ_CP093366
Coordinates   327946..329322 (+) Length   458 a.a.
NCBI ID   WP_249514670.1    Uniprot ID   -
Organism   Bombilactobacillus folatiphilus strain SG4_D2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 322946..334322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOO45_RS01535 (MOO45_01535) - 323859..324383 (+) 525 WP_249514665.1 shikimate kinase -
  MOO45_RS01540 (MOO45_01540) - 324863..326206 (-) 1344 WP_249514666.1 C1 family peptidase -
  MOO45_RS01545 (MOO45_01545) rpiA 326278..326964 (-) 687 WP_249514667.1 ribose-5-phosphate isomerase RpiA -
  MOO45_RS01550 (MOO45_01550) - 326951..327259 (-) 309 WP_249514668.1 GNAT family N-acetyltransferase -
  MOO45_RS01555 (MOO45_01555) - 327403..327939 (+) 537 WP_396022412.1 dUTP diphosphatase -
  MOO45_RS01560 (MOO45_01560) radA 327946..329322 (+) 1377 WP_249514670.1 DNA repair protein RadA Machinery gene
  MOO45_RS01565 (MOO45_01565) gltX 329403..330896 (+) 1494 WP_249514671.1 glutamate--tRNA ligase -
  MOO45_RS01570 (MOO45_01570) cysS 330964..332376 (+) 1413 WP_249514673.1 cysteine--tRNA ligase -
  MOO45_RS01575 (MOO45_01575) - 332373..332786 (+) 414 WP_249514674.1 Mini-ribonuclease 3 -
  MOO45_RS01580 (MOO45_01580) rlmB 332767..333537 (+) 771 WP_249514675.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MOO45_RS01585 (MOO45_01585) - 333534..334061 (+) 528 WP_249514677.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49960.32 Da        Isoelectric Point: 6.6961

>NTDB_id=664079 MOO45_RS01560 WP_249514670.1 327946..329322(+) (radA) [Bombilactobacillus folatiphilus strain SG4_D2]
MAKAKTRYICQTCGYVSPQMLGRCPNCGAWNQMVEEIERPVNTKATPSRTSVSHSQPMKLNAVQFDEQQRHQTGISELDR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLAQTGGKVLYVSGEESASQIKLRANRLQITADNLYLYPETDMSAIRDA
IAEQKPNYLVIDSVQTMNEPELASAIGSVAQIREVTAELMNIAKQQGVSVFVVGHVTKGGAIAGPKILEHMVDTVLYFEG
DLHHNYRILRSVKNRFGSTNEIGMFEMNNDGLREVTNPSEIFLEERLAQATGSAVVVSMEGTRPILVEIQSLISPTLYGN
AKRTTTGLDHNRVSVIMAVLEKRANILLQNQDAYLKATGGVRLNEPAIDLAMAMAIVSSYKDQGLAPDECFVGEIGLTGE
IRRVNLIEQRIKEAAKLGFQKIYVPANNDIDVHDFPEIQIVGVKTIGKTIKQVFGTRI

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=664079 MOO45_RS01560 WP_249514670.1 327946..329322(+) (radA) [Bombilactobacillus folatiphilus strain SG4_D2]
GTGGCAAAAGCAAAAACGCGTTATATTTGTCAGACTTGTGGTTATGTATCGCCGCAAATGTTGGGGCGTTGTCCTAATTG
TGGTGCTTGGAATCAAATGGTGGAAGAAATTGAACGTCCGGTCAACACCAAGGCGACGCCGAGTCGGACGTCCGTGTCAC
ATAGTCAACCTATGAAGTTAAACGCAGTGCAATTTGATGAGCAGCAAAGGCATCAAACCGGCATTTCTGAGTTGGATCGA
GTGTTAGGCGGTGGTGTGGTACCTGGTTCGTTGGTCCTGATTGGTGGCGATCCGGGGATTGGCAAGTCGACTTTGTTATT
GCAAGTGTCGGGGCAATTGGCACAAACGGGTGGCAAAGTTTTGTACGTTTCTGGTGAAGAAAGTGCTTCCCAAATTAAAT
TGCGCGCCAATCGGTTGCAAATCACGGCAGATAATTTGTATTTATATCCTGAAACAGATATGAGTGCCATTCGCGATGCG
ATTGCTGAGCAAAAACCTAATTATTTGGTCATTGATTCAGTGCAAACGATGAATGAGCCTGAATTGGCGTCGGCAATCGG
CAGCGTGGCCCAAATTCGCGAAGTGACGGCTGAATTAATGAATATTGCTAAGCAACAAGGCGTCAGTGTTTTTGTCGTGG
GTCATGTCACGAAAGGCGGGGCCATTGCGGGACCGAAAATTTTGGAACATATGGTTGATACGGTTTTGTATTTTGAAGGC
GATTTGCATCATAATTATCGAATTTTGCGTTCTGTCAAAAATCGTTTTGGTTCCACGAATGAAATCGGCATGTTTGAGAT
GAATAACGATGGTTTAAGAGAGGTGACGAATCCGTCCGAAATCTTTTTAGAGGAGCGTTTGGCGCAAGCAACGGGTTCGG
CAGTGGTCGTTTCAATGGAGGGCACGCGTCCAATTTTAGTGGAAATTCAATCTTTGATTAGTCCAACTCTGTATGGTAAC
GCGAAACGAACAACGACTGGTTTGGACCATAATCGGGTTTCGGTAATTATGGCGGTGTTGGAAAAGCGGGCCAATATTTT
ATTGCAAAATCAAGATGCTTATCTGAAAGCAACTGGTGGTGTGCGGCTGAATGAACCAGCGATTGATTTAGCCATGGCCA
TGGCGATTGTGTCCAGTTATAAAGATCAAGGTTTGGCTCCCGATGAATGTTTTGTGGGGGAAATCGGCTTAACCGGCGAA
ATTCGGCGTGTGAATTTAATCGAACAGCGGATTAAAGAGGCGGCCAAATTAGGCTTCCAAAAAATTTATGTACCGGCTAA
TAATGATATTGACGTACATGATTTTCCAGAAATTCAAATTGTGGGTGTGAAGACCATTGGCAAGACAATTAAGCAGGTCT
TTGGAACGCGAATTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(363-428)

AAA domain (AAA_25)

(59-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

64.317

99.127

0.638
  radA Streptococcus pneumoniae Rx1

64.317

99.127

0.638
  radA Streptococcus pneumoniae D39

64.317

99.127

0.638
  radA Streptococcus pneumoniae R6

64.317

99.127

0.638
  radA Streptococcus pneumoniae TIGR4

64.317

99.127

0.638
  radA Streptococcus mitis SK321

64.317

99.127

0.638
  radA Bacillus subtilis subsp. subtilis str. 168

58.952

100

0.59