Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MOO47_RS01815 Genome accession   NZ_CP093365
Coordinates   337813..339195 (-) Length   460 a.a.
NCBI ID   WP_249513135.1    Uniprot ID   -
Organism   Bombilactobacillus thymidiniphilus strain SG4_A1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 332813..344195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOO47_RS01790 (MOO47_01790) - 333033..333560 (-) 528 WP_249513131.1 NYN domain-containing protein -
  MOO47_RS01795 (MOO47_01795) rlmB 333563..334330 (-) 768 WP_396022048.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MOO47_RS01800 (MOO47_01800) - 334311..334724 (-) 414 WP_249513132.1 Mini-ribonuclease 3 -
  MOO47_RS01805 (MOO47_01805) cysS 334721..336130 (-) 1410 WP_249513133.1 cysteine--tRNA ligase -
  MOO47_RS01810 (MOO47_01810) gltX 336188..337681 (-) 1494 WP_249513134.1 glutamate--tRNA ligase -
  MOO47_RS01815 (MOO47_01815) radA 337813..339195 (-) 1383 WP_249513135.1 DNA repair protein RadA Machinery gene
  MOO47_RS01820 (MOO47_01820) - 339205..339738 (-) 534 WP_249513515.1 dUTP diphosphatase -
  MOO47_RS01825 (MOO47_01825) - 339862..340167 (+) 306 WP_249513136.1 GNAT family N-acetyltransferase -
  MOO47_RS01830 (MOO47_01830) rpiA 340154..340840 (+) 687 WP_249513137.1 ribose-5-phosphate isomerase RpiA -
  MOO47_RS01835 (MOO47_01835) - 340914..342257 (+) 1344 WP_249513138.1 aminopeptidase C -
  MOO47_RS01840 (MOO47_01840) - 342272..342766 (-) 495 WP_249513139.1 shikimate kinase -
  MOO47_RS01845 (MOO47_01845) aroA 342763..344064 (-) 1302 WP_249513140.1 3-phosphoshikimate 1-carboxyvinyltransferase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 50330.78 Da        Isoelectric Point: 6.8359

>NTDB_id=664059 MOO47_RS01815 WP_249513135.1 337813..339195(-) (radA) [Bombilactobacillus thymidiniphilus strain SG4_A1]
MAKVKTRFVCQNCGYISPRMLGRCPNCGGWNQLVEEIEHPVNKKATPSRQKNSNAAENVPTKLRDVVYDEKTRVKTGMPE
LNRVLGGGIVQGSLILIGGDPGIGKSTLLLQVSGQLEQSGGKVLYVSGEESAAQIKLRANRLQVTGDNLYLYPETDMAQI
RATVATQKPDYLIIDSVQTMNEPELASAIGSVSQIREVTAELMNIAKQQGVTVFVVGHVTKGGAIAGPKILEHMVDTVLY
FEGDEHYNYRLLRSVKNRFGSTNEIGMFEMVNEGLKEVSNPSEIFLEERLLDSTGSAVVVSMEGTRPILVEIQALTAPTL
YGTAKRTTTGLDHNRVAVIMAVLEKHSNILLQNQDAYLKATGGVHLDEPAIDLAMALAIVSGYKNKSLAADECFVGEIGL
TGEVRRVNLLDQRIKEAEKLGFQKIYLPANNKLQARDYPDIELVGVKTVNEAIKRVFGNY

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=664059 MOO47_RS01815 WP_249513135.1 337813..339195(-) (radA) [Bombilactobacillus thymidiniphilus strain SG4_A1]
ATGGCAAAAGTAAAAACGCGTTTTGTTTGTCAAAATTGTGGATATATTTCACCGCGCATGTTGGGGCGTTGTCCCAATTG
TGGCGGATGGAATCAATTAGTTGAAGAAATTGAACATCCAGTTAATAAAAAAGCGACGCCTAGTCGGCAAAAAAATAGTA
ATGCTGCCGAAAATGTCCCTACTAAATTACGCGACGTGGTTTACGATGAAAAAACACGTGTAAAAACGGGTATGCCCGAG
TTAAATCGTGTTTTAGGCGGTGGCATTGTCCAAGGTTCACTGATTTTGATTGGTGGCGATCCAGGAATTGGTAAATCAAC
TTTATTATTGCAAGTTTCCGGACAATTAGAACAAAGTGGTGGCAAAGTTTTGTATGTTTCTGGTGAAGAAAGTGCTGCGC
AAATTAAGTTACGCGCAAATCGCTTACAAGTAACTGGTGATAATTTGTATCTTTATCCAGAAACAGATATGGCTCAAATT
CGCGCCACTGTTGCCACCCAAAAACCTGATTATTTAATAATTGATTCAGTTCAAACAATGAATGAGCCAGAATTGGCTTC
GGCAATCGGCAGTGTTTCGCAAATCCGTGAAGTAACGGCAGAATTAATGAATATTGCTAAGCAACAAGGAGTAACTGTTT
TTGTGGTTGGTCATGTGACTAAAGGTGGAGCCATTGCTGGTCCTAAAATTTTGGAACATATGGTGGATACGGTTTTGTAT
TTTGAAGGTGATGAGCACTATAATTATCGCTTGTTGCGATCCGTTAAAAATCGCTTTGGCTCAACCAATGAAATTGGGAT
GTTTGAAATGGTCAATGAAGGATTGAAAGAAGTTAGTAATCCATCAGAAATTTTTCTGGAAGAGCGTTTGTTAGATTCTA
CAGGATCTGCCGTGGTCGTTTCGATGGAAGGAACACGCCCTATTTTGGTAGAAATCCAGGCCTTAACTGCGCCCACGCTT
TATGGTACTGCTAAGCGTACCACCACAGGTTTAGATCATAATCGTGTTGCTGTAATTATGGCGGTTTTAGAGAAGCATTC
TAATATCTTGTTACAAAACCAAGATGCCTATTTGAAAGCAACTGGTGGTGTTCATTTAGATGAGCCAGCCATTGATTTAG
CTATGGCTTTGGCCATTGTTTCCGGCTACAAAAACAAAAGTTTGGCTGCCGATGAATGTTTTGTGGGAGAAATCGGCTTG
ACAGGTGAGGTTAGACGAGTTAATTTGCTTGATCAACGTATTAAAGAAGCAGAGAAATTAGGCTTTCAAAAGATTTATTT
GCCAGCTAATAATAAATTACAAGCACGTGATTATCCTGATATTGAATTAGTTGGTGTTAAAACAGTCAATGAAGCGATTA
AAAGAGTATTTGGTAATTATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(70-223)

Subunit ChlI of Mg-chelatase (ChlI)

(369-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

62.227

99.565

0.62
  radA Streptococcus pneumoniae Rx1

62.227

99.565

0.62
  radA Streptococcus pneumoniae D39

62.227

99.565

0.62
  radA Streptococcus pneumoniae R6

62.227

99.565

0.62
  radA Streptococcus pneumoniae TIGR4

62.227

99.565

0.62
  radA Streptococcus mitis NCTC 12261

62.009

99.565

0.617
  radA Bacillus subtilis subsp. subtilis str. 168

56.833

100

0.57