Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG379_RS28580 Genome accession   NZ_CP108613
Coordinates   6195655..6196452 (-) Length   265 a.a.
NCBI ID   WP_104789571.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01166     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6190655..6201452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG379_RS28565 (OG379_28580) - 6190928..6191647 (+) 720 WP_405665831.1 GNAT family N-acetyltransferase -
  OG379_RS28570 (OG379_28585) - 6191708..6193567 (+) 1860 WP_405665833.1 IucA/IucC family protein -
  OG379_RS28575 (OG379_28590) - 6193618..6195585 (+) 1968 WP_405665834.1 ATP-dependent DNA helicase -
  OG379_RS28580 (OG379_28595) dinR/lexA 6195655..6196452 (-) 798 WP_104789571.1 transcriptional repressor LexA Regulator
  OG379_RS28585 (OG379_28600) nrdR 6196987..6197502 (+) 516 WP_405665836.1 transcriptional regulator NrdR -
  OG379_RS28590 (OG379_28605) - 6197659..6200568 (+) 2910 WP_405665837.1 vitamin B12-dependent ribonucleotide reductase -
  OG379_RS28595 (OG379_28610) - 6200698..6201231 (-) 534 WP_405665838.1 TerD family protein -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28805.61 Da        Isoelectric Point: 7.0792

>NTDB_id=664057 OG379_RS28580 WP_104789571.1 6195655..6196452(-) (dinR/lexA) [Streptomyces sp. NBC_01166]
MTTTADSATITAQDHRSQSRLEPVHAMNDSVMNAEGPEPTRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAIMDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPH
NSAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=664057 OG379_RS28580 WP_104789571.1 6195655..6196452(-) (dinR/lexA) [Streptomyces sp. NBC_01166]
GTGACCACCACCGCAGACAGCGCCACCATCACTGCCCAGGACCACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCCAT
GAATGACTCAGTCATGAACGCGGAGGGGCCAGAGCCCACACGCCCCGCACGCTCCTTGCCCGGCCGGCCTCCTGGAATCC
GGGCGGACAGCTCCGGGCTCACGGACCGGCAGCGGCGTGTGATCGAGGTGATCCGGGATTCCGTGCAGCGGCGGGGCTAT
CCCCCGTCGATGCGCGAGATCGGCCAGGCGGTGGGGCTCTCGAGCACCTCGTCCGTCGCCCACCAGCTGATGGCTCTGGA
GCGCAAGGGCTTCCTGCGCCGCGACCCTCACCGGCCGCGCGCCTACGAGGTCCGGGGCTCGGATCAGCCCAGCACCCAGC
CGACCGACACCACCGGGAAGCCCGCGGCGTCGTACGTGCCGCTGGTCGGCCGGATCGCCGCCGGCGGGCCGATCCTCGCC
GAGGAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTCGTCGGTGACGGCGAGCTCTTCGTGCTGAAGGTCGTCGG
TGACTCGATGATCGAGGCGGCGATCATGGATGGGGACTGGGTCACGGTCCGGCGCCAGCCGGTCGCGGAGAACGGCGACA
TCGTGGCAGCCATGCTGGACGGCGAGGCCACGGTCAAGCGGTTCAAGCGGGAGGACGGCCATGTCTGGCTGCTCCCGCAC
AACTCCGCCTACCAGCCGATCCCTGGTGACGAGGCGACGATCCTTGGCAAGGTCGTGGCGGTGCTGCGGCGAGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(58-121)

Peptidase S24-like (Peptidase_S24)

(147-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80

0.37