Detailed information NTG0066404

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: JCM16456_RS09165
• Genome accession: NZ_AP014635
• Coordinates: 2087417..2088841 (+)
• Length: 474 a.a.
• NCBI ID: WP_068713928.1
• Uniprot ID: -
• Organism: Vibrio tritonius strain AM2
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2082417..2093841

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JCM16456_RS09150	-	2083418..2084251 (+)	834	WP_068713926.1	outer membrane lipoprotein-sorting protein	-
JCM16456_RS09155	-	2084341..2085471 (+)	1131	WP_068716003.1	hypothetical protein	-
JCM16456_RS09160	-	2085509..2086984 (-)	1476	WP_068713927.1	right-handed parallel beta-helix repeat-containing protein	-
JCM16456_RS09165	sbcB	2087417..2088841 (+)	1425	WP_068713928.1	exodeoxyribonuclease I	Machinery gene
JCM16456_RS09170	-	2088874..2089296 (+)	423	WP_068713929.1	CidA/LrgA family protein	-
JCM16456_RS09175	-	2089296..2089985 (+)	690	WP_068713930.1	CidB/LrgB family autolysis modulator	-
JCM16456_RS09180	cdd	2090260..2091153 (+)	894	WP_068713931.1	cytidine deaminase	-
JCM16456_RS09185	purT	2091492..2092667 (+)	1176	WP_068713932.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
JCM16456_RS09190	-	2092732..2093379 (-)	648	WP_068713933.1	thiopurine S-methyltransferase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54826.98 Da
• Isoelectric Point: 4.9711

>NTDB_id=66404 JCM16456_RS09165 WP_068713928.1 2087417..2088841(+) (sbcB) [Vibrio tritonius strain AM2]
MQQQHQPTFFFFDYETWGTSPAKDRPSQFAGIRTDADFNIIGDPLVMYCRLPSDYLPGPEAALITGITPQKAMSQGVSEP
EFIGRIYEELSRPNTTNLGYNSIRFDDEVTRYTCYRNFFDPYEWSWKNGNSRWDLLDVLRACHALRPEGIEWPENDEGFP
SFKLEHLSKANGIEHDNAHDALADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLTDLVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNQNAVITVDLAKDPTPLLELSAEELQTRLYTRKDDLADDELPVPVKLVHLNKCPILAPAKTLTAENAK
VIGIDREQCLANLATLREHPAIREKLINLFSQEREFAKDEDVDTQLYQGFFSPADKAAMEIIRETNPDQLASLELEYSDK
RIEPLLFRYRARHYPWTLNEAEQRRWANHCREYFESHIESYMLNLENLVHEHESDTQKIAILKAVYRYVEQLAS

Nucleotide

• Length: 1425 bp

>NTDB_id=66404 JCM16456_RS09165 WP_068713928.1 2087417..2088841(+) (sbcB) [Vibrio tritonius strain AM2]
ATGCAACAGCAACACCAGCCTACTTTCTTTTTCTTTGACTATGAGACTTGGGGTACTAGCCCAGCCAAAGACAGGCCAAG
TCAGTTTGCTGGCATTCGTACCGATGCAGACTTCAATATCATCGGGGATCCTTTGGTCATGTACTGTCGATTACCAAGCG
ATTATCTACCAGGACCAGAAGCTGCCTTGATAACTGGCATCACACCACAAAAAGCCATGAGCCAAGGGGTGTCTGAGCCG
GAATTCATTGGTCGAATTTATGAAGAATTGTCACGTCCTAACACCACCAACCTAGGCTATAACAGTATTCGTTTTGATGA
CGAAGTCACTCGTTATACCTGTTATCGTAACTTCTTTGATCCATACGAATGGAGTTGGAAAAACGGTAATTCTCGTTGGG
ATCTACTCGATGTATTACGTGCCTGCCACGCTCTCCGTCCCGAAGGGATTGAATGGCCAGAAAATGATGAAGGGTTCCCT
AGTTTTAAGCTAGAACACCTCTCAAAAGCCAACGGTATTGAACACGATAACGCGCACGATGCCTTAGCCGATGTGATAGC
GACCATTGAAATGGCGAAAAAGGTCAAAGCGGCGCAACCTAAATTGTTCGACTATTTCTTCAGCATGCGTAATAAACGCA
AATTAACGGATCTGGTCGATATCGTTAATATGACGCCGCTAATGCACGTCTCTGGCATGCTCGGTCGTGAGTGCCAATAC
ACCAGTTGGATTGTGCCTGTCGCATGGCACCCAACCAATCAAAATGCTGTGATTACGGTGGATCTGGCCAAAGACCCAAC
GCCGTTACTGGAACTCTCCGCTGAAGAATTGCAGACTCGTCTCTATACTCGTAAAGACGATCTTGCCGATGATGAACTGC
CCGTTCCGGTCAAACTCGTGCATTTAAACAAATGCCCTATTTTAGCACCAGCGAAAACATTAACTGCAGAAAACGCCAAA
GTGATTGGCATCGATCGTGAGCAATGCTTGGCGAATTTGGCGACCTTGCGTGAACATCCAGCTATTCGAGAAAAGCTCAT
CAATCTGTTTAGTCAAGAACGTGAGTTTGCGAAAGATGAAGATGTGGATACGCAGTTATATCAGGGATTCTTCTCACCTG
CCGATAAGGCCGCCATGGAAATCATCCGTGAAACAAATCCAGATCAATTGGCCTCATTAGAATTGGAATATAGTGATAAG
CGCATTGAACCTTTGCTGTTTCGATACCGTGCTCGTCATTATCCTTGGACACTCAATGAAGCAGAACAACGTCGCTGGGC
AAATCACTGCCGCGAATATTTTGAAAGCCACATTGAGTCTTACATGCTCAATTTGGAAAATTTAGTCCATGAACATGAAA
GCGATACTCAGAAAATCGCAATATTAAAAGCCGTTTATCGGTACGTAGAACAACTCGCCTCTTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-471)

• Exonuclease (RNase_T) (11-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	80.761	99.789	0.806