Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MOO46_RS00035 Genome accession   NZ_CP093362
Coordinates   6022..7398 (+) Length   458 a.a.
NCBI ID   WP_249511013.1    Uniprot ID   -
Organism   Apilactobacillus apisilvae strain SG5_A10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1022..12398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOO46_RS00010 (MOO46_00010) - 1404..2351 (+) 948 WP_249511008.1 DMT family transporter -
  MOO46_RS00015 (MOO46_00015) - 2373..3041 (+) 669 WP_249511009.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  MOO46_RS00020 (MOO46_00020) - 3090..4427 (-) 1338 WP_249511010.1 aminopeptidase C -
  MOO46_RS00025 (MOO46_00025) rpiA 4541..5224 (-) 684 WP_249511011.1 ribose-5-phosphate isomerase RpiA -
  MOO46_RS00030 (MOO46_00030) - 5461..5997 (+) 537 WP_249511012.1 dUTP diphosphatase -
  MOO46_RS00035 (MOO46_00035) radA 6022..7398 (+) 1377 WP_249511013.1 DNA repair protein RadA Machinery gene
  MOO46_RS00040 (MOO46_00040) - 7423..8502 (+) 1080 WP_396121426.1 PIN/TRAM domain-containing protein -
  MOO46_RS00045 (MOO46_00045) gltX 8596..10086 (+) 1491 WP_249511015.1 glutamate--tRNA ligase -
  MOO46_RS00050 (MOO46_00050) cysS 10232..11641 (+) 1410 WP_249511016.1 cysteine--tRNA ligase -
  MOO46_RS00055 (MOO46_00055) - 11645..12064 (+) 420 WP_249511017.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49792.17 Da        Isoelectric Point: 7.7402

>NTDB_id=664034 MOO46_RS00035 WP_249511013.1 6022..7398(+) (radA) [Apilactobacillus apisilvae strain SG5_A10]
MAKVKIQFVCKECGYISPKYLGHCPNCGHWNTFEEQTAQKENVSLKSNRRMDFNGKQAKPELISKVAYEKDHRFKTDSDE
FNRVLGGGVVPGSLILIGGDPGIGKSTLLLQISGQLGKKEQTILYVSGEESASQIKIRAERLGVDGSNLYLYPETDMGAI
RNAIDELKPDAVVVDSVQTISEPEVDSSIGSVSQVRAITANLMSIAKTNGITIFVVGHVTKGGAIAGPKTLEHMVDTVLY
FEGDMHHSYRILRAVKNRFGSTDELGIFDMQESGLQEVANPSEVFLEERLKDATGSAIVVSIEGTRPILVEIQALITPSV
FGNAQRTSTGIDRNRVAVLMAVLEKRSGLMLQNQDAFLKAAGGVKLNEPAIDLAVAIGIASSYRNIGTNPSECYIGEIGL
TGEIRRVTRIEQRVTEAKKLGFKRVLVPKHNLKGWTVPNGIEVIGVSTLTEAIKIALR

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=664034 MOO46_RS00035 WP_249511013.1 6022..7398(+) (radA) [Apilactobacillus apisilvae strain SG5_A10]
TTGGCTAAAGTAAAAATTCAGTTTGTTTGTAAAGAATGTGGTTATATATCGCCTAAATATTTAGGCCATTGTCCTAATTG
TGGTCATTGGAACACTTTTGAAGAACAAACTGCTCAAAAAGAAAATGTTAGTTTAAAATCTAATCGTCGAATGGATTTTA
ATGGTAAGCAAGCAAAACCAGAATTAATTAGTAAAGTTGCTTACGAAAAAGATCATCGTTTTAAAACCGATTCAGACGAA
TTTAATCGTGTTTTAGGTGGTGGAGTGGTTCCAGGATCATTAATATTAATTGGTGGTGATCCTGGAATTGGAAAATCTAC
TTTACTTTTACAAATTTCTGGGCAACTAGGTAAAAAAGAACAGACAATTTTATATGTATCTGGAGAAGAAAGTGCCAGTC
AAATTAAGATTAGAGCAGAAAGATTAGGCGTTGATGGTTCCAACTTATATCTTTACCCAGAAACTGATATGGGTGCAATT
AGAAATGCGATTGATGAATTAAAGCCAGATGCGGTAGTTGTTGATTCAGTGCAAACCATCTCTGAACCAGAAGTTGATTC
TAGTATAGGTTCAGTTTCACAAGTTCGTGCAATTACAGCTAATTTAATGTCAATTGCTAAAACTAATGGAATTACGATTT
TTGTTGTTGGACATGTAACCAAGGGTGGTGCAATTGCTGGACCTAAGACTCTTGAACACATGGTTGACACTGTTTTATAT
TTTGAAGGTGATATGCACCATTCATATCGAATTCTTAGAGCAGTGAAAAATCGTTTTGGATCTACCGATGAATTGGGAAT
TTTTGATATGCAAGAATCTGGATTGCAGGAAGTTGCTAATCCATCAGAAGTGTTTTTAGAAGAACGCTTAAAGGATGCTA
CCGGATCAGCAATTGTAGTTTCTATCGAAGGAACTAGGCCTATTTTAGTAGAAATTCAAGCGCTTATTACACCATCAGTA
TTTGGAAATGCACAAAGAACTTCAACTGGAATTGATCGTAATCGAGTCGCAGTTTTAATGGCTGTGTTAGAGAAAAGATC
TGGTCTGATGTTGCAAAATCAGGATGCATTTTTAAAGGCTGCTGGTGGAGTTAAATTAAATGAACCAGCAATTGATTTAG
CCGTTGCAATCGGGATTGCTTCTAGTTACCGTAACATTGGCACTAATCCAAGTGAGTGTTATATCGGTGAAATTGGTTTA
ACTGGTGAAATCAGAAGAGTTACTCGAATTGAGCAACGAGTAACTGAGGCTAAAAAATTAGGGTTTAAACGTGTCTTGGT
ACCTAAACATAATTTAAAAGGTTGGACGGTTCCAAATGGAATTGAAGTTATTGGTGTTTCAACACTAACTGAAGCTATAA
AAATAGCACTTAGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(69-223)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-431)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

63.656

99.127

0.631
  radA Streptococcus pneumoniae D39

63.656

99.127

0.631
  radA Streptococcus pneumoniae R6

63.656

99.127

0.631
  radA Streptococcus pneumoniae TIGR4

63.656

99.127

0.631
  radA Streptococcus mitis NCTC 12261

63.656

99.127

0.631
  radA Streptococcus mitis SK321

63.656

99.127

0.631
  radA Bacillus subtilis subsp. subtilis str. 168

62.174

100

0.624