Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   JCM16456_RS02585 Genome accession   NZ_AP014635
Coordinates   553874..554392 (+) Length   172 a.a.
NCBI ID   WP_068712093.1    Uniprot ID   -
Organism   Vibrio tritonius strain AM2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 548874..559392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JCM16456_RS02575 gshA 551675..553240 (+) 1566 WP_068712087.1 glutamate--cysteine ligase -
  JCM16456_RS02580 - 553242..553847 (+) 606 WP_068712091.1 hypothetical protein -
  JCM16456_RS02585 luxS 553874..554392 (+) 519 WP_068712093.1 S-ribosylhomocysteine lyase Regulator
  JCM16456_RS02590 - 554499..555776 (-) 1278 WP_068712094.1 HlyC/CorC family transporter -
  JCM16456_RS02595 - 555863..556657 (-) 795 WP_068712095.1 inner membrane protein YpjD -
  JCM16456_RS02600 ffh 556884..558275 (+) 1392 WP_068712097.1 signal recognition particle protein -
  JCM16456_RS02605 rpsP 558497..558745 (+) 249 WP_068712099.1 30S ribosomal protein S16 -
  JCM16456_RS02610 rimM 558767..559321 (+) 555 WP_068712103.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19134.00 Da        Isoelectric Point: 5.8047

>NTDB_id=66402 JCM16456_RS02585 WP_068712093.1 553874..554392(+) (luxS) [Vibrio tritonius strain AM2]
MPLLDSFTVDHTRMHAPAVRVAKNMTTPKGDTITVFDLRFTVPNKDILSERGIHTLEHLFAGFMRAHLNGSDVEIIDISP
MGCRTGFYMSLIGAPDEQRVAQAWLAAMEDVLKVEDQNHIPELNKYQCGTAAMHSLEQAKEIAQNVITAGIQVNKNDDLA
LPEAMLKELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=66402 JCM16456_RS02585 WP_068712093.1 553874..554392(+) (luxS) [Vibrio tritonius strain AM2]
ATGCCACTATTAGACAGTTTTACCGTCGATCATACACGTATGCATGCACCAGCAGTTCGTGTGGCAAAAAACATGACAAC
CCCTAAAGGCGATACCATTACGGTATTTGACTTGCGCTTTACTGTTCCTAACAAAGACATTTTGTCTGAAAGAGGAATTC
ATACACTAGAACATCTGTTTGCAGGATTCATGCGCGCGCACCTTAACGGTTCTGATGTCGAGATTATTGATATTTCACCA
ATGGGTTGTCGTACTGGTTTTTACATGAGTCTTATCGGCGCACCTGATGAGCAGCGTGTTGCGCAAGCATGGTTAGCAGC
AATGGAAGATGTACTGAAAGTTGAAGATCAAAATCATATTCCTGAACTGAACAAATACCAATGTGGCACTGCAGCGATGC
ACTCTCTAGAGCAAGCAAAGGAGATTGCACAAAATGTGATTACCGCAGGTATCCAAGTCAATAAGAACGACGACTTGGCA
CTGCCAGAAGCGATGTTAAAAGAACTGAAAGTTCATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.628

100

0.866

Multiple sequence alignment