Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MOO44_RS02285 Genome accession   NZ_CP093361
Coordinates   140099..141493 (-) Length   464 a.a.
NCBI ID   WP_260116825.1    Uniprot ID   A0A976RSK8
Organism   Nicoliella spurrieriana strain SGEP1_A5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 135099..146493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MOO44_RS02260 (MOO44_02265) - 135298..135828 (-) 531 WP_260116820.1 NYN domain-containing protein -
  MOO44_RS02265 (MOO44_02270) rlmB 135849..136601 (-) 753 WP_260116821.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  MOO44_RS02270 (MOO44_02275) - 136591..137010 (-) 420 WP_260116822.1 Mini-ribonuclease 3 -
  MOO44_RS02275 (MOO44_02280) cysS 137010..138419 (-) 1410 WP_260116823.1 cysteine--tRNA ligase -
  MOO44_RS02280 (MOO44_02285) gltX 138540..140027 (-) 1488 WP_260116824.1 glutamate--tRNA ligase -
  MOO44_RS02285 (MOO44_02290) radA 140099..141493 (-) 1395 WP_260116825.1 DNA repair protein RadA Machinery gene
  MOO44_RS02290 (MOO44_02295) - 141508..142047 (-) 540 WP_260116826.1 dUTP diphosphatase -
  MOO44_RS02295 (MOO44_02300) rpiA 142324..143004 (+) 681 WP_260116827.1 ribose-5-phosphate isomerase RpiA -
  MOO44_RS02300 (MOO44_02305) - 143106..144446 (+) 1341 WP_260116828.1 C1 family peptidase -
  MOO44_RS02305 (MOO44_02310) - 144505..145173 (-) 669 WP_260116829.1 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase -
  MOO44_RS02310 (MOO44_02315) - 145200..146162 (-) 963 WP_260116830.1 DMT family transporter -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50423.97 Da        Isoelectric Point: 8.3195

>NTDB_id=664015 MOO44_RS02285 WP_260116825.1 140099..141493(-) (radA) [Nicoliella spurrieriana strain SGEP1_A5]
MAKVKTQYVCDNCGYISPRFLGRCPNCGKWNTLVEEIVKPQGGTTSTAKKISPTRTDFNGSSTKPELVGQIKAHTEMRVQ
TDSEEFNRVLGGGVVPGSLILIGGDPGIGKSTLLLQISGELSNRGHKMLYVSGEESANQIKLRADRLGVASDQLYIYPET
DMDAIRHSIEELKPDFVVIDSVQTVEEPAIQSAIGSVAQVRGITSDLMNIAKSKGITIFLVGHVTKGGTLAGPKTLEHMV
DTVLYFEGDMHHSYRLLRAVKNRFGSTNELGVFEMREGGLKEVRNPSEIFLEERLKDATGSAIVVSMEGTRPILVEIQAL
ITPSIFGNAQRTASGLDRNRVSLIMAVLEKRAGLMLQNQDAYLKAAGGVKLNEPAIDLAMAVSIASSYKDRGTRPSECYI
GEIGLTGEIRRVTRIEQRVAEAQKLGFERVLIPKNNLSGWTPPTGMQVIGVATLREALSIALKN

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=664015 MOO44_RS02285 WP_260116825.1 140099..141493(-) (radA) [Nicoliella spurrieriana strain SGEP1_A5]
GTGGCAAAAGTAAAGACCCAATACGTTTGTGATAACTGTGGGTATATTTCACCACGGTTTTTGGGGCGTTGTCCTAACTG
TGGGAAGTGGAATACACTAGTAGAAGAAATTGTGAAACCCCAGGGGGGGACCACTAGTACCGCTAAAAAAATCTCTCCGA
CCCGGACTGACTTTAACGGCAGTTCCACGAAGCCAGAGTTGGTGGGCCAAATTAAGGCGCACACTGAAATGCGGGTCCAA
ACCGATTCAGAAGAGTTCAATCGCGTTTTGGGGGGCGGAGTGGTTCCTGGATCATTGATTTTAATTGGTGGTGATCCTGG
GATTGGGAAATCGACGCTCCTACTTCAAATTTCGGGAGAACTAAGTAACCGGGGCCATAAAATGTTGTATGTTTCCGGTG
AAGAAAGTGCCAATCAAATTAAATTACGTGCTGATCGGTTAGGCGTGGCTAGCGATCAACTCTACATTTATCCTGAGACC
GACATGGATGCAATTCGCCACTCAATTGAGGAATTAAAACCAGACTTTGTTGTAATTGATTCGGTTCAAACGGTTGAAGA
GCCAGCAATTCAATCCGCAATTGGTTCGGTTGCCCAGGTTCGCGGAATTACTTCTGATTTAATGAATATCGCTAAGTCAA
AGGGCATCACGATTTTCCTAGTGGGGCACGTGACTAAGGGCGGAACATTGGCTGGTCCTAAGACGCTTGAACACATGGTT
GATACGGTTTTATACTTTGAGGGAGATATGCACCATTCATACCGGCTACTACGGGCGGTTAAGAATCGGTTTGGCTCGAC
CAATGAATTGGGAGTCTTCGAAATGCGCGAGGGCGGCTTAAAGGAAGTTCGGAATCCATCTGAAATTTTCTTGGAGGAAC
GCCTAAAGGATGCCACTGGTTCGGCCATTGTGGTTTCGATGGAAGGGACCCGACCGATTTTAGTAGAAATTCAGGCTTTA
ATTACTCCGTCGATATTTGGGAATGCCCAACGAACTGCATCTGGATTAGATCGTAACCGGGTCTCATTAATTATGGCGGT
CCTTGAAAAACGGGCTGGTCTAATGCTCCAAAATCAAGACGCCTACCTAAAGGCAGCTGGGGGCGTTAAGTTAAACGAAC
CGGCAATCGATTTGGCAATGGCGGTTAGCATCGCTTCCAGCTATAAGGACCGGGGCACCCGTCCATCAGAATGTTACATT
GGTGAAATTGGGTTGACCGGTGAAATTAGGCGGGTCACAAGAATCGAACAACGGGTAGCAGAAGCCCAGAAGCTGGGATT
TGAACGGGTCTTGATTCCGAAAAATAACCTTAGTGGTTGGACACCGCCGACTGGAATGCAGGTAATTGGAGTGGCTACTT
TGCGGGAAGCCCTTTCAATCGCATTGAAAAATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-436)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

62.581

100

0.627
  radA Streptococcus mitis NCTC 12261

63.537

98.707

0.627
  radA Streptococcus mitis SK321

63.537

98.707

0.627
  radA Streptococcus pneumoniae TIGR4

63.319

98.707

0.625
  radA Streptococcus pneumoniae D39

63.319

98.707

0.625
  radA Streptococcus pneumoniae Rx1

63.319

98.707

0.625
  radA Streptococcus pneumoniae R6

63.319

98.707

0.625