Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG379_RS13370 Genome accession   NZ_CP108613
Coordinates   2884568..2885251 (-) Length   227 a.a.
NCBI ID   WP_031091966.1    Uniprot ID   A0ABU8A1V4
Organism   Streptomyces sp. NBC_01166     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2879568..2890251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG379_RS13360 (OG379_13385) - 2881396..2882415 (+) 1020 WP_405662365.1 hypothetical protein -
  OG379_RS13365 (OG379_13390) clpX 2883113..2884411 (-) 1299 WP_103516222.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG379_RS13370 (OG379_13395) clpP 2884568..2885251 (-) 684 WP_031091966.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG379_RS13375 (OG379_13400) - 2885319..2885924 (-) 606 WP_031091967.1 ATP-dependent Clp protease proteolytic subunit -
  OG379_RS13380 (OG379_13405) tig 2886210..2887607 (-) 1398 WP_405662367.1 trigger factor -
  OG379_RS13395 (OG379_13420) - 2888158..2888508 (-) 351 WP_405662370.1 DUF1330 domain-containing protein -
  OG379_RS13400 (OG379_13425) - 2888657..2888851 (-) 195 WP_073746901.1 hypothetical protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 24784.12 Da        Isoelectric Point: 4.6800

>NTDB_id=664015 OG379_RS13370 WP_031091966.1 2884568..2885251(-) (clpP) [Streptomyces sp. NBC_01166]
MVNTHMNNFSGASASGLYTGPQVDNRYVVPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMD
PDRDISIYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPHARVLIHQPSSQTGREQLS
DLEIAANEILRMRTQLEEMLAKHSTTPLEKISEDIERDKILTADDALAYGLVDQIVSTRKTTAGASV

Nucleotide


Download         Length: 684 bp        

>NTDB_id=664015 OG379_RS13370 WP_031091966.1 2884568..2885251(-) (clpP) [Streptomyces sp. NBC_01166]
ATGGTGAACACCCACATGAACAACTTCTCCGGCGCCTCCGCGAGCGGCCTCTACACCGGCCCGCAGGTGGACAACCGCTA
CGTCGTCCCGCGCTTCGTGGAGCGCACCTCGCAGGGTGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCG
TGATCTTCCTCGGTGTGCAGATCGACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTCGAGTCGATGGAC
CCGGACCGCGACATCTCGATCTACATCAACAGCCCCGGCGGCTCGTTCACCGCGCTCACCGCGATCTACGACACGATGCA
GTTCGTGAAGCCGGACATCCAGACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCCGTCCTGCTGGCCGCGGGCACCC
CGGGCAAGCGCATGGCGCTCCCGCACGCCCGTGTGCTGATCCACCAGCCGTCCTCGCAGACCGGCCGTGAGCAGCTCTCC
GACCTGGAGATCGCGGCCAACGAGATCCTGCGGATGCGCACCCAGCTCGAGGAGATGCTGGCGAAGCACTCCACCACCCC
GCTGGAGAAGATCAGCGAGGACATCGAGCGCGACAAGATCCTTACCGCGGACGACGCACTCGCGTACGGTCTGGTGGACC
AGATTGTCTCCACCCGTAAGACCACAGCAGGCGCGTCCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(38-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

50

83.7

0.419
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.872

82.819

0.396
  clpP Lactococcus lactis subsp. cremoris KW2

44.503

84.141

0.374
  clpP Streptococcus thermophilus LMG 18311

43.814

85.463

0.374
  clpP Streptococcus thermophilus LMD-9

43.814

85.463

0.374
  clpP Streptococcus mutans UA159

44.211

83.7

0.37
  clpP Streptococcus pyogenes JRS4

43.299

85.463

0.37
  clpP Streptococcus pyogenes MGAS315

43.299

85.463

0.37
  clpP Streptococcus pneumoniae Rx1

43.75

84.581

0.37
  clpP Streptococcus pneumoniae D39

43.75

84.581

0.37
  clpP Streptococcus pneumoniae R6

43.75

84.581

0.37
  clpP Streptococcus pneumoniae TIGR4

43.75

84.581

0.37
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.979

84.141

0.37