Detailed information NTG0664006

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: MN180_RS26795
• Genome accession: NZ_CP093358
• Coordinates: 5676756..5678117 (-)
• Length: 453 a.a.
• NCBI ID: WP_010793777.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain E167
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 5671756..5683117

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MN180_RS26770 (MN180_26770)	yjiA	5671943..5672947 (-)	1005	WP_023114850.1	GTPase	-
MN180_RS26775 (MN180_26775)	-	5673007..5673210 (-)	204	WP_003094856.1	YbdD/YjiX family protein	-
MN180_RS26780 (MN180_26780)	-	5673259..5675325 (-)	2067	WP_003094859.1	carbon starvation CstA family protein	-
MN180_RS26785 (MN180_26785)	-	5675663..5676169 (-)	507	WP_003094862.1	DUF3015 domain-containing protein	-
MN180_RS26790 (MN180_26790)	mapZ	5676372..5676749 (+)	378	WP_003094864.1	cyclic di-GMP-binding protein MapZ	-
MN180_RS26795 (MN180_26795)	radA	5676756..5678117 (-)	1362	WP_010793777.1	DNA repair protein RadA	Machinery gene
MN180_RS26800 (MN180_26800)	-	5678227..5678661 (+)	435	WP_023114851.1	CopD family protein	-
MN180_RS26805 (MN180_26805)	-	5678723..5678977 (-)	255	WP_003104887.1	YdcH family protein	-
MN180_RS26810 (MN180_26810)	-	5679052..5679603 (-)	552	WP_003121338.1	ankyrin repeat domain-containing protein	-
MN180_RS26815 (MN180_26815)	katB	5679657..5681198 (-)	1542	WP_003094881.1	catalase KatB	-
MN180_RS26820 (MN180_26820)	-	5681195..5681683 (-)	489	WP_169433242.1	hypothetical protein	-
MN180_RS26825 (MN180_26825)	mscL	5681726..5682139 (+)	414	WP_003104883.1	large-conductance mechanosensitive channel protein MscL	-
MN180_RS26830 (MN180_26830)	-	5682244..5683020 (-)	777	WP_003110878.1	ferredoxin--NADP reductase	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 48379.79 Da
• Isoelectric Point: 6.8357

>NTDB_id=664006 MN180_RS26795 WP_010793777.1 5676756..5678117(-) (radA) [Pseudomonas aeruginosa strain E167]
MAKAKRMYGCTECGATFPKWAGQCADCGAWNTLVETVVEAAPSGSGRGGWAGQPANLKTLAEVSVEEMPRFTTGSTELDR
VLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLASRVPALYVTGEESQQQVAMRARRLSLPEDKLKVMTETSIETIIATA
RQEQPRVMVIDSIQTIFTEQLQSAPGGVAQVRESAAMLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFEGE
SDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEAVPGSVVMATWEGSRPMLVEVQALVDTSHLANP
RRVTLGLDQNRLAMLLAVLHRHGGIPTYDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSGEV
RPVPSGQERLKEAGKHGFKRAIVPLGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide

• Length: 1362 bp

>NTDB_id=664006 MN180_RS26795 WP_010793777.1 5676756..5678117(-) (radA) [Pseudomonas aeruginosa strain E167]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCGCGACCTTCCCGAAATGGGCCGGCCAGTGCGCGGACTG
CGGGGCCTGGAACACCCTGGTGGAGACCGTCGTCGAGGCCGCGCCGAGCGGCTCCGGCCGCGGCGGCTGGGCCGGCCAGC
CGGCCAACCTGAAGACCCTGGCGGAGGTCAGCGTCGAGGAAATGCCGCGCTTCACGACCGGCTCCACCGAACTGGACCGG
GTTCTCGGCGGCGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCCGGCATCGGCAAGTCGACCATTCTCCT
GCAGACCCTTTGCAACCTGGCCAGCCGCGTCCCGGCGCTGTACGTCACCGGCGAGGAATCCCAGCAGCAGGTGGCGATGC
GCGCGCGGCGCCTGTCGTTGCCGGAAGACAAGCTCAAGGTGATGACCGAGACCAGCATCGAAACCATCATCGCCACCGCG
CGCCAGGAGCAGCCGCGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAGCAGTTGCAATCGGCGCCGGGTGG
CGTCGCCCAGGTCCGCGAGAGCGCCGCGATGCTGGTGCGCTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGGTCGGCC
ACGTGACCAAGGAAGGCGCCCTGGCCGGCCCGCGGGTGCTCGAACACATGGTCGACACCGTACTGTATTTCGAGGGCGAA
TCAGACGGCCGCCTGCGCCTGCTGCGGGCGGTGAAGAACCGCTTCGGCGCGGTCAACGAACTGGGAGTGTTCGGCATGAC
CGACAAAGGCCTGAAGGAAGTGAGCAACCCTTCGGCGATCTTCCTCACGCGGGCCCAGGAAGCGGTGCCCGGCAGCGTGG
TGATGGCCACCTGGGAAGGCTCGCGGCCGATGCTGGTGGAGGTCCAGGCGCTGGTCGACACCAGTCACCTGGCGAATCCG
CGGCGGGTGACCCTGGGCCTCGACCAGAACCGCCTGGCGATGCTGCTGGCGGTGCTGCACCGGCACGGCGGTATCCCGAC
CTACGACCAGGACGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAAACCGCCTCCGACCTGGCGTTGATGGCGG
CGGTGATGTCCAGCCTGCGCAACCGCCCGCTGCCGCACGACCTGCTGGTGTTCGGCGAGGTCGGGCTGTCCGGCGAGGTG
CGTCCGGTGCCGAGCGGCCAGGAGCGCCTGAAGGAAGCCGGCAAGCATGGTTTCAAGCGTGCCATCGTACCCCTCGGCAA
CGCGCCGAAGGAGGCGCCGGCGGGATTGCAGGTGATCGCCGTGACGCGCCTCGAGCAGGCCCTGGACGCCCTCTTCGAGT
GA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (361-427)

• AAA domain (AAA_25) (74-219)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.458	100	0.486
radA	Streptococcus pneumoniae Rx1	46.288	100	0.468
radA	Streptococcus pneumoniae D39	46.288	100	0.468
radA	Streptococcus pneumoniae R6	46.288	100	0.468
radA	Streptococcus pneumoniae TIGR4	46.288	100	0.468
radA	Streptococcus mitis SK321	46.389	100	0.468
radA	Streptococcus mitis NCTC 12261	46.171	100	0.466