Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG317_RS34785 Genome accession   NZ_CP108612
Coordinates   7798258..7798947 (+) Length   229 a.a.
NCBI ID   WP_340477272.1    Uniprot ID   A0ACC6Q6V7
Organism   Streptomyces sp. NBC_01167     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7793258..7803947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG317_RS34765 (OG317_34760) - 7793743..7794261 (-) 519 WP_340477268.1 SRPBCC family protein -
  OG317_RS34770 (OG317_34765) - 7794589..7795764 (+) 1176 WP_405575040.1 Cmx/CmrA family chloramphenicol efflux MFS transporter -
  OG317_RS34775 (OG317_34770) - 7796033..7797211 (+) 1179 WP_405575042.1 MFS transporter -
  OG317_RS34780 (OG317_34775) - 7797325..7798011 (+) 687 WP_405575044.1 DNA alkylation repair protein -
  OG317_RS34785 (OG317_34780) dinR/lexA 7798258..7798947 (+) 690 WP_340477272.1 transcriptional repressor LexA Regulator
  OG317_RS34790 (OG317_34785) - 7799089..7799301 (-) 213 WP_313942308.1 hypothetical protein -
  OG317_RS34795 (OG317_34790) - 7799494..7800063 (-) 570 WP_340477273.1 hypothetical protein -
  OG317_RS34800 (OG317_34795) - 7800060..7800356 (-) 297 WP_405575047.1 hypothetical protein -
  OG317_RS34805 (OG317_34800) - 7800458..7801678 (-) 1221 WP_405575049.1 serine hydrolase domain-containing protein -
  OG317_RS34810 (OG317_34805) - 7801980..7802588 (+) 609 WP_405575051.1 GPP34 family phosphoprotein -
  OG317_RS34815 (OG317_34810) - 7802653..7803186 (-) 534 WP_340477277.1 GNAT family protein -
  OG317_RS34820 (OG317_34815) - 7803238..7803576 (-) 339 WP_383234737.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24957.30 Da        Isoelectric Point: 8.6051

>NTDB_id=663984 OG317_RS34785 WP_340477272.1 7798258..7798947(+) (dinR/lexA) [Streptomyces sp. NBC_01167]
MHADEPARRGRPPGGQTDADGLTSRQAAVVNFIEQTVARKGYPPSMREIGEAVDLKSTSSVAHQLMTLERKGFVERDPHR
PRAYRVRRRLTSDSGHASTPPRTQGHTADVPLLGRIAAGPPILADESVEDVLTLPRQLVGEGELFALTVVGDSMIDAAIR
DGDIVTVRRQQTADHGDTVAALLDGEATVKRLHREAGEVWLMPANPAYQPLRGDQARILGKVVALMRRF

Nucleotide


Download         Length: 690 bp        

>NTDB_id=663984 OG317_RS34785 WP_340477272.1 7798258..7798947(+) (dinR/lexA) [Streptomyces sp. NBC_01167]
ATGCATGCGGACGAACCAGCGCGCCGGGGGCGCCCGCCGGGCGGGCAGACGGACGCGGACGGTTTGACGAGCAGGCAGGC
CGCCGTCGTGAACTTCATCGAGCAGACCGTGGCCCGCAAGGGATACCCGCCGTCGATGCGTGAGATCGGCGAAGCGGTGG
ACCTCAAGTCGACCTCGTCGGTCGCGCATCAGCTGATGACGCTGGAACGCAAGGGCTTCGTCGAGCGCGACCCGCACCGC
CCCCGCGCCTACCGGGTCCGCAGACGCCTCACCTCCGACTCCGGCCACGCGTCCACACCGCCCCGTACGCAGGGGCACAC
GGCCGATGTGCCGCTGCTGGGACGCATCGCGGCCGGCCCTCCGATCCTCGCCGACGAATCCGTCGAGGACGTCCTGACCC
TGCCGAGGCAACTGGTCGGCGAGGGCGAGCTGTTCGCACTGACCGTGGTCGGCGACAGCATGATCGACGCGGCGATCCGC
GACGGCGACATCGTCACGGTCCGCCGCCAGCAGACAGCGGACCACGGTGACACGGTGGCGGCGCTCCTCGACGGCGAAGC
AACCGTGAAGCGCCTCCACCGCGAAGCAGGCGAAGTCTGGCTGATGCCGGCGAACCCGGCCTACCAGCCTCTGCGCGGCG
ACCAGGCACGGATCCTCGGCAAGGTTGTGGCGCTCATGCGGCGCTTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(21-83)

Peptidase S24-like (Peptidase_S24)

(111-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

42.788

90.83

0.389