Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG317_RS27730 Genome accession   NZ_CP108612
Coordinates   6221914..6222699 (-) Length   261 a.a.
NCBI ID   WP_340475822.1    Uniprot ID   A0ACC6Q2N7
Organism   Streptomyces sp. NBC_01167     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6216914..6227699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG317_RS27715 (OG317_27715) - 6217088..6217825 (+) 738 WP_340475817.1 GNAT family N-acetyltransferase -
  OG317_RS27720 (OG317_27720) - 6217885..6219792 (+) 1908 WP_405573292.1 IucA/IucC family protein -
  OG317_RS27725 (OG317_27725) - 6219836..6221803 (+) 1968 WP_356704351.1 ATP-dependent DNA helicase -
  OG317_RS27730 (OG317_27730) dinR/lexA 6221914..6222699 (-) 786 WP_340475822.1 transcriptional repressor LexA Regulator
  OG317_RS27735 (OG317_27735) nrdR 6223278..6223790 (+) 513 WP_313943691.1 transcriptional regulator NrdR -
  OG317_RS27740 (OG317_27740) - 6223956..6226838 (+) 2883 WP_340475824.1 vitamin B12-dependent ribonucleotide reductase -
  OG317_RS27745 (OG317_27745) - 6226932..6227636 (-) 705 WP_340475825.1 RraA family protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28297.02 Da        Isoelectric Point: 8.0891

>NTDB_id=663974 OG317_RS27730 WP_340475822.1 6221914..6222699(-) (dinR/lexA) [Streptomyces sp. NBC_01167]
MTTTADSATITAQDRSQNRFEPVHAMNDAATTPEGPKPTRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSM
REIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSNQPTDTSGKPAASYVPLVGRIAAGGPILAEESV
EDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKRENGHVWLLPHNAAY
QPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 786 bp        

>NTDB_id=663974 OG317_RS27730 WP_340475822.1 6221914..6222699(-) (dinR/lexA) [Streptomyces sp. NBC_01167]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAACCGATTCGAGCCGGTGCATGCCATGAA
TGACGCAGCCACGACCCCCGAGGGTCCCAAGCCGACGCGTTCGCTGCCCGGCCGGCCCCCAGGGATCAGGGCGGACAGCT
CCGGGCTCACGGATCGGCAGCGGCGTGTCATCGAGGTGATCCGTGACTCCGTCCAGCGACGGGGTTACCCGCCATCGATG
CGCGAGATCGGCCAGGCCGTGGGCCTGTCCAGCACCTCCTCGGTCGCCCATCAGCTGATGGCGCTCGAGCGCAAGGGCTT
CCTGCGCCGGGACCCCCATCGGCCCAGGGCCTACGAGGTGCGCGGCTCCGACCAGCCCAGCAACCAGCCGACGGACACCA
GCGGCAAGCCCGCCGCGTCGTACGTCCCACTGGTCGGCCGGATCGCGGCCGGTGGCCCGATCCTGGCCGAGGAGTCGGTC
GAGGACGTCTTCCCGCTCCCCCGGCAGCTGGTCGGCGACGGCGAGCTGTTCGTCCTCAAGGTCGTCGGTGACTCGATGAT
CGAGGCCGCCATCTGTGACGGCGACTGGGTGACCGTGCGGCGCCAGCCCGTCGCGGAGAACGGTGACATCGTGGCAGCCA
TGCTCGACGGCGAGGCCACGGTCAAGCGGTTCAAGCGGGAGAACGGCCACGTCTGGCTGCTTCCGCACAATGCGGCGTAC
CAGCCGATCCCCGGCGACGAAGCGACCATCCTCGGCAAGGTGGTGGCTGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(143-255)

LexA DNA binding domain (LexA_DNA_bind)

(54-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.755

81.226

0.372