Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   MN178_RS26700 Genome accession   NZ_CP093356
Coordinates   5664063..5664620 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain E125     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5659063..5669620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN178_RS26680 (MN178_26680) pilR 5660339..5661676 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  MN178_RS26685 (MN178_26685) thiO 5661722..5662816 (-) 1095 WP_023087807.1 glycine oxidase ThiO -
  MN178_RS26690 (MN178_26690) - 5662951..5663460 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  MN178_RS26695 (MN178_26695) - 5663566..5664072 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  MN178_RS26700 (MN178_26700) pilV 5664063..5664620 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  MN178_RS26705 (MN178_26705) pilW 5664617..5665441 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  MN178_RS26710 (MN178_26710) pilX 5665438..5666025 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  MN178_RS26715 (MN178_26715) pilY1 5666037..5669528 (+) 3492 WP_003123397.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=663937 MN178_RS26700 WP_003119423.1 5664063..5664620(+) (pilV) [Pseudomonas aeruginosa strain E125]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=663937 MN178_RS26700 WP_003119423.1 5664063..5664620(+) (pilV) [Pseudomonas aeruginosa strain E125]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995