Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   LRN73_RS25595 Genome accession   NZ_CP093355
Coordinates   5455946..5456503 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain E104     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5450946..5461503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRN73_RS25575 (LRN73_25575) pilR 5452222..5453559 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  LRN73_RS25580 (LRN73_25580) thiO 5453605..5454699 (-) 1095 WP_023114840.1 glycine oxidase ThiO -
  LRN73_RS25585 (LRN73_25585) - 5454834..5455343 (+) 510 WP_017002065.1 Tfp pilus assembly protein FimT/FimU -
  LRN73_RS25590 (LRN73_25590) - 5455449..5455955 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  LRN73_RS25595 (LRN73_25595) pilV 5455946..5456503 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  LRN73_RS25600 (LRN73_25600) pilW 5456500..5457324 (+) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  LRN73_RS25605 (LRN73_25605) pilX 5457321..5457908 (+) 588 WP_023114842.1 type 4a pilus minor pilin PilX -
  LRN73_RS25610 (LRN73_25610) pilY1 5457920..5461411 (+) 3492 WP_023114843.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=663902 LRN73_RS25595 WP_003094697.1 5455946..5456503(+) (pilV) [Pseudomonas aeruginosa strain E104]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=663902 LRN73_RS25595 WP_003094697.1 5455946..5456503(+) (pilV) [Pseudomonas aeruginosa strain E104]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978