Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   MN130_RS26285 Genome accession   NZ_CP093354
Coordinates   5633976..5634533 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain E113     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5628976..5639533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN130_RS26265 (MN130_26265) pilR 5630252..5631589 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  MN130_RS26270 (MN130_26270) thiO 5631635..5632729 (-) 1095 WP_003145981.1 glycine oxidase ThiO -
  MN130_RS26275 (MN130_26275) - 5632864..5633373 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  MN130_RS26280 (MN130_26280) - 5633479..5633985 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  MN130_RS26285 (MN130_26285) pilV 5633976..5634533 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  MN130_RS26290 (MN130_26290) pilW 5634530..5635354 (+) 825 WP_023114841.1 type 4a pilus minor pilin PilW -
  MN130_RS26295 (MN130_26295) pilX 5635351..5635938 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  MN130_RS26300 (MN130_26300) pilY1 5635950..5639441 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=663869 MN130_RS26285 WP_003119423.1 5633976..5634533(+) (pilV) [Pseudomonas aeruginosa strain E113]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=663869 MN130_RS26285 WP_003119423.1 5633976..5634533(+) (pilV) [Pseudomonas aeruginosa strain E113]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTTAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995