Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MNO14_RS05820 Genome accession   NZ_CP093340
Coordinates   1278200..1279588 (+) Length   462 a.a.
NCBI ID   WP_241945785.1    Uniprot ID   -
Organism   Luteimonas sp. S4-F44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1273200..1284588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNO14_RS05795 (MNO14_05795) - 1274009..1275115 (+) 1107 WP_241945780.1 MvdC/MvdD family ATP grasp protein -
  MNO14_RS05800 (MNO14_05800) - 1275227..1275421 (+) 195 WP_241945781.1 hypothetical protein -
  MNO14_RS05805 (MNO14_05805) - 1275513..1276217 (+) 705 WP_241945782.1 hypothetical protein -
  MNO14_RS05810 (MNO14_05810) - 1276406..1276978 (+) 573 WP_241945783.1 nucleoside 2-deoxyribosyltransferase -
  MNO14_RS05815 (MNO14_05815) - 1276994..1278118 (-) 1125 WP_241945784.1 diguanylate cyclase -
  MNO14_RS05820 (MNO14_05820) radA 1278200..1279588 (+) 1389 WP_241945785.1 DNA repair protein RadA Machinery gene
  MNO14_RS05825 (MNO14_05825) - 1279629..1280183 (+) 555 WP_241945786.1 hypothetical protein -
  MNO14_RS05830 (MNO14_05830) - 1280215..1281789 (-) 1575 WP_241945787.1 DHA2 family efflux MFS transporter permease subunit -
  MNO14_RS05835 (MNO14_05835) - 1281815..1283002 (-) 1188 WP_241945788.1 efflux RND transporter periplasmic adaptor subunit -
  MNO14_RS05840 (MNO14_05840) - 1282999..1284489 (-) 1491 WP_241945789.1 efflux transporter outer membrane subunit -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 48508.92 Da        Isoelectric Point: 7.1872

>NTDB_id=663806 MNO14_RS05820 WP_241945785.1 1278200..1279588(+) (radA) [Luteimonas sp. S4-F44]
MAKPAAKARTAFVCSECGADYNKWQGQCSACGAWDTIAEIVLESAASVRSPAARRSGWAGKVDAPKVMALKDVQQGEDVR
VSTGIGEFDRVLGGGLVEGAVVLVGGDPGIGKSTLLLQALARMAHTLPGLYVTGEESLAQVAGRAVRLGLSLDGLHALAE
TGIERILEHASKLKPGLIIADSIQTLWTESLTAAPGSVSQVRESAARLVRYAKETGTAVFLVGHVTKEGGIAGPRVLEHM
VDAVLYFEGDSGSRFRVMRAFKNRFGAVNELGVFAMGEKGLKEVANPSAIFLSGAGAQQPGSCIMVTREGTRPLLVEVQA
LVDASPLSNPRRVAVGMEGNRLAMLLAVLHRHGGIMTGDQDVFVNVVGGIRVQETAADLPVLLSVLSSLRDIPLPDKTIA
FGEVGLAGEIRPVPNGEERLKEAATHGFVRAIVPRANAPKAGAYKGMEVIAVERLAEALEHV

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=663806 MNO14_RS05820 WP_241945785.1 1278200..1279588(+) (radA) [Luteimonas sp. S4-F44]
ATGGCCAAGCCCGCCGCCAAAGCCCGAACCGCCTTCGTGTGCAGCGAGTGCGGCGCCGACTACAACAAGTGGCAGGGGCA
GTGCAGCGCCTGCGGTGCCTGGGACACGATCGCCGAGATCGTGCTTGAGAGCGCGGCGTCGGTCCGCTCGCCCGCGGCGC
GCCGATCGGGCTGGGCCGGCAAGGTCGATGCGCCCAAGGTCATGGCGCTCAAGGATGTGCAGCAGGGCGAGGACGTGCGG
GTGTCGACCGGCATCGGCGAGTTCGACCGGGTGCTGGGCGGCGGTCTGGTCGAAGGCGCGGTGGTGCTGGTCGGCGGCGA
TCCTGGCATCGGCAAATCCACGCTGCTGCTGCAGGCGCTGGCACGGATGGCGCACACGTTGCCGGGGCTGTACGTCACCG
GCGAGGAATCGCTGGCCCAAGTCGCCGGGCGCGCGGTCCGGTTGGGCCTGTCGCTCGACGGTCTGCACGCGCTGGCCGAG
ACCGGGATCGAGCGCATTCTCGAGCACGCCTCCAAACTCAAGCCCGGGCTGATCATCGCCGACTCGATCCAGACCCTGTG
GACCGAGTCGCTGACCGCGGCACCCGGCTCGGTGAGCCAGGTCCGCGAGTCGGCCGCGCGGCTGGTGCGCTATGCCAAGG
AGACCGGCACCGCGGTGTTCCTGGTCGGCCACGTCACCAAGGAGGGCGGCATCGCCGGCCCGCGCGTGCTCGAGCACATG
GTCGACGCGGTGCTGTATTTCGAGGGCGACAGCGGCAGCCGCTTCCGGGTGATGCGCGCATTCAAGAACCGCTTCGGCGC
GGTCAACGAACTGGGCGTGTTCGCGATGGGTGAAAAAGGCCTCAAGGAGGTCGCCAACCCGTCGGCGATCTTCCTGTCGG
GGGCGGGCGCGCAGCAGCCGGGCAGTTGCATCATGGTCACCCGCGAGGGCACCCGGCCGTTGCTGGTCGAGGTGCAGGCG
CTGGTCGACGCCTCGCCGCTCTCGAACCCGCGACGCGTCGCGGTCGGCATGGAGGGCAACCGGCTGGCGATGCTGCTGGC
GGTGCTGCATCGGCACGGTGGCATCATGACCGGGGACCAGGACGTGTTCGTCAACGTCGTCGGCGGCATCCGCGTGCAGG
AGACCGCGGCCGACCTGCCGGTGCTGCTGTCGGTGCTGTCGTCGTTGCGCGACATCCCGCTGCCGGACAAGACCATCGCC
TTCGGCGAGGTCGGCCTGGCCGGCGAGATCCGGCCGGTGCCCAACGGCGAGGAGCGCCTGAAGGAGGCCGCCACGCACGG
CTTCGTGCGCGCGATCGTGCCGCGCGCCAACGCGCCCAAGGCCGGTGCCTACAAGGGCATGGAGGTCATCGCGGTCGAAC
GGCTGGCCGAGGCGCTCGAGCATGTCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(354-437)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(12-39)

KaiC (ATPase)

(81-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

98.701

0.481
  radA Streptococcus mitis NCTC 12261

42.888

98.918

0.424
  radA Streptococcus pneumoniae Rx1

42.888

98.918

0.424
  radA Streptococcus pneumoniae D39

42.888

98.918

0.424
  radA Streptococcus pneumoniae R6

42.888

98.918

0.424
  radA Streptococcus pneumoniae TIGR4

42.888

98.918

0.424
  radA Streptococcus mitis SK321

42.67

98.918

0.422