Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG414_RS11155 Genome accession   NZ_CP108605
Coordinates   2395271..2397004 (+) Length   577 a.a.
NCBI ID   WP_405629492.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01174     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2390271..2402004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG414_RS11120 (OG414_11115) - 2391080..2391286 (-) 207 WP_124276628.1 hypothetical protein -
  OG414_RS11125 (OG414_11120) - 2391445..2392365 (+) 921 WP_405629489.1 MBL fold metallo-hydrolase -
  OG414_RS11145 (OG414_11140) - 2393148..2393459 (+) 312 WP_147985161.1 YtxH domain-containing protein -
  OG414_RS11150 (OG414_11145) - 2393714..2395159 (+) 1446 WP_124276591.1 FGGY family carbohydrate kinase -
  OG414_RS11155 (OG414_11150) rcrP 2395271..2397004 (+) 1734 WP_405629492.1 ABC transporter ATP-binding protein Regulator
  OG414_RS11160 (OG414_11155) - 2397004..2398926 (+) 1923 WP_405629494.1 ABC transporter ATP-binding protein -
  OG414_RS11165 (OG414_11160) - 2398944..2400020 (-) 1077 WP_099172462.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62817.18 Da        Isoelectric Point: 6.1944

>NTDB_id=663784 OG414_RS11155 WP_405629492.1 2395271..2397004(+) (rcrP) [Streptomyces sp. NBC_01174]
MLIKLLRTCLGPYRRPIMLLVLLQLLQTCASLYLPSLNADIIDNGVVKGDTGYILQFGAMMIAVSIIQIVCNVGAVYYGA
RTASALGRDVRALIFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGVIMALGQDVPLSAV
LLAVLPVLGVSVALIVRRMRPLFRTMQVRLDKVNRVLREQITGNRVIRAFIRDDYEEKRFREANTELTDVAVSTGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMSVMMATFMFIMVPRAEVCAERIQEVLETESSVVP
PSAPVTKLLKHGHLEIRGAEFRFPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGDVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKDFVERLEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRGALSRETAGATVVIVAQRVSTIRDADRILVLDEGRVVGSGSHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=663784 OG414_RS11155 WP_405629492.1 2395271..2397004(+) (rcrP) [Streptomyces sp. NBC_01174]
GTGCTCATAAAACTCCTGCGGACCTGTCTGGGTCCGTACAGACGTCCCATCATGCTGCTGGTACTGCTCCAGCTCCTGCA
GACCTGCGCCAGCCTCTATCTGCCCAGCCTCAACGCGGACATCATTGACAACGGTGTCGTGAAGGGTGACACGGGTTACA
TCCTGCAATTCGGCGCCATGATGATCGCCGTCAGCATCATCCAGATCGTCTGCAACGTCGGGGCGGTCTACTACGGCGCC
AGGACGGCCTCCGCCCTGGGGCGCGACGTACGCGCACTGATATTCGACCGGGTGCAGTCGTTCTCCGCCCGCGAGGTGGG
GCGGTTCGGGGCACCCTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGGTGCAGATGCTCGTCCTGATGGCGTTCA
CCTTGATGGTCTCGGCGCCCATCATGTGTGTCGGCGGCGTCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCGGCGGTG
CTGCTGGCGGTGCTGCCCGTCCTCGGTGTCTCGGTGGCCCTCATCGTGAGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGTGCGGCTGGACAAGGTGAACCGTGTGCTGCGGGAGCAGATCACCGGCAACCGTGTCATCCGGGCGTTCATCCGTGACG
ACTACGAGGAAAAGCGCTTCCGCGAAGCCAACACGGAGCTGACGGACGTCGCGGTGTCGACGGGCCGGCTGATGGCGCTC
ATGTTCCCGACGGTGATGACGGTCGTGAACCTGTCGTCCATCGCGGTCGTCTGGTTCGGGGCGCACCGCATCGACAGCGG
CGGGATGCAGATAGGCGCGCTGACGGCGTTCCTCGCGTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATCATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCGAGCGTGGTGCCG
CCCAGCGCCCCGGTCACGAAGCTGCTCAAGCACGGCCATCTGGAGATACGGGGCGCGGAGTTCCGCTTCCCGGGCGCCGA
GGAGCCGGTGCTCCGCTCGGTCGACCTGGTGGCGCGGCCCGGGGAGACCACGGCGATCATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGGCTCGTACCGCGGCTGTTCGACGCGACGGACGGCGATGTGCTCGTCGACGGTACGGACGTGCGG
ACGCTGGATCCGGTCCTGCTGGCGAAGACCGTGAGCCTGGTCCCGCAGAAGCCTTACCTGTTCTCGGGGACGGTCGCGAC
GAATCTGCGCTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCGAAGGACTTCG
TGGAGCGGCTGGAACACGGCCTGGACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGAGGCCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCCCTGGACTACGCGACGGA
CGCCGCGCTGCGCGGTGCGCTGTCCCGTGAGACGGCGGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACGATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGGTCGGGCAGCCATCACGAGCTGATGGACGGCAAC
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.652

100

0.411