Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MNQ98_RS26845 Genome accession   NZ_CP093336
Coordinates   5722451..5723818 (-) Length   455 a.a.
NCBI ID   WP_241930905.1    Uniprot ID   -
Organism   Paenibacillus sp. N3/727     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5717451..5728818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNQ98_RS26820 (MNQ98_26820) ispD 5717841..5718527 (-) 687 WP_241930900.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MNQ98_RS26825 (MNQ98_26825) - 5718616..5719704 (-) 1089 WP_241930901.1 PIN/TRAM domain-containing protein -
  MNQ98_RS26830 (MNQ98_26830) - 5720004..5720399 (+) 396 WP_241930902.1 DUF1573 domain-containing protein -
  MNQ98_RS26835 (MNQ98_26835) pssA 5720580..5721308 (-) 729 WP_241930903.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  MNQ98_RS26840 (MNQ98_26840) disA 5721361..5722437 (-) 1077 WP_241930904.1 DNA integrity scanning diadenylate cyclase DisA -
  MNQ98_RS26845 (MNQ98_26845) radA 5722451..5723818 (-) 1368 WP_241930905.1 DNA repair protein RadA Machinery gene
  MNQ98_RS26850 (MNQ98_26850) clpC 5723995..5726448 (-) 2454 WP_241930906.1 ATP-dependent protease ATP-binding subunit ClpC -
  MNQ98_RS26855 (MNQ98_26855) - 5726606..5727676 (-) 1071 WP_241930907.1 protein arginine kinase -
  MNQ98_RS26860 (MNQ98_26860) - 5727727..5728245 (-) 519 WP_241930908.1 UvrB/UvrC motif-containing protein -
  MNQ98_RS26865 (MNQ98_26865) - 5728273..5728734 (-) 462 WP_241930909.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49683.37 Da        Isoelectric Point: 7.1650

>NTDB_id=663784 MNQ98_RS26845 WP_241930905.1 5722451..5723818(-) (radA) [Paenibacillus sp. N3/727]
MAKTKTKFYCTDCGYESPKWYGKCPGCQAWNSMVEETETVIKTQGMNSPLFHSKEKPVSIINIESGKEPRIETGIVELNR
VLGGGLVPGSLVLVGGDPGIGKSTLLLQTSNQLARNGLRVLYISGEESVRQTKLRADRLGALSPELFVLCETNLDTIEEA
IENVQPQFVVIDSIQTVYQPEVSSAPGSVAQVRECTARFMRLAKVKGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYFEG
ERHHTYRLLRAVKNRFGSTNEIGIFEMGEEGLREVGNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALISSTHFPS
PRRMGTGVDHHRMNLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDMPTKPYDVIFGEVGLTGE
VRAVSRAEQRVKEAEKLGFKRVLMPEKSLKGWKHPKGIQIIGVNTVADALAVALD

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=663784 MNQ98_RS26845 WP_241930905.1 5722451..5723818(-) (radA) [Paenibacillus sp. N3/727]
ATGGCAAAAACAAAAACAAAATTTTACTGCACCGACTGCGGCTATGAATCGCCGAAATGGTACGGTAAATGCCCGGGTTG
TCAGGCCTGGAATTCGATGGTGGAAGAAACAGAGACAGTCATCAAGACACAGGGGATGAATTCTCCCCTTTTTCATAGTA
AAGAAAAGCCCGTATCGATCATAAATATAGAAAGCGGTAAGGAACCCCGGATCGAGACCGGGATTGTAGAGCTGAACCGT
GTACTCGGCGGCGGTCTCGTCCCGGGTTCACTTGTGCTTGTAGGCGGCGATCCGGGAATCGGGAAATCTACTCTGCTGCT
CCAAACATCCAATCAGCTGGCGCGAAACGGACTTCGGGTGTTGTACATTTCCGGAGAGGAATCGGTGCGCCAGACGAAAC
TTCGAGCTGACCGTCTTGGAGCGCTGTCACCGGAACTTTTTGTTCTGTGCGAGACGAATCTGGATACCATTGAGGAAGCG
ATTGAGAACGTGCAGCCTCAATTCGTTGTCATCGACTCCATTCAGACCGTGTACCAGCCGGAAGTGTCAAGTGCACCCGG
TAGCGTTGCTCAAGTTCGGGAATGCACAGCAAGGTTCATGCGTCTGGCTAAGGTAAAAGGAATTGCTACTGTTCTCGTTG
GTCATGTGACCAAGGAAGGTGCGATCGCGGGTCCACGATTGCTTGAGCATATGGTGGATTGTGTATTGTATTTTGAAGGA
GAACGGCATCACACGTATCGTCTTCTTCGCGCGGTAAAGAACCGCTTTGGTTCCACGAACGAGATCGGAATTTTTGAGAT
GGGTGAAGAAGGATTGCGTGAGGTGGGCAATCCATCCGAACTATTTTTGTCAGAACGGCCGCTCGGTGTTGCCGGATCAA
CCGTTGTTGCGAGTATGGAGGGCACTCGTCCGGTACTGGTGGAACTTCAGGCGCTCATCTCGTCAACCCATTTTCCTTCA
CCGCGAAGAATGGGTACAGGGGTGGATCATCACCGGATGAATTTGATTATTGCTGTACTTGAGAAACGTATGGGCATGTT
CCTGCAAAATCAGGACGCCTATCTGAATGTCGCCGGTGGGGTTAAGCTGGATGAACCAGCGGTAGATTTGGCTATTGCAG
TCAGCATCGCATCGAGCTTTCGGGATATGCCAACGAAGCCATATGATGTCATATTCGGCGAGGTAGGGCTGACCGGTGAA
GTCCGTGCCGTTTCCCGAGCGGAGCAGCGGGTAAAAGAGGCAGAAAAGCTTGGATTCAAAAGAGTACTTATGCCTGAGAA
GAGCTTGAAGGGCTGGAAGCATCCGAAAGGCATACAAATTATTGGAGTCAATACCGTGGCAGATGCACTAGCGGTTGCGT
TAGATTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-220)

Subunit ChlI of Mg-chelatase (ChlI)

(344-427)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

67.974

100

0.686
  radA Streptococcus pneumoniae Rx1

58.889

98.901

0.582
  radA Streptococcus pneumoniae D39

58.889

98.901

0.582
  radA Streptococcus pneumoniae R6

58.889

98.901

0.582
  radA Streptococcus pneumoniae TIGR4

58.889

98.901

0.582
  radA Streptococcus mitis NCTC 12261

58.889

98.901

0.582
  radA Streptococcus mitis SK321

58.667

98.901

0.58