Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MNQ98_RS20210 Genome accession   NZ_CP093336
Coordinates   4387386..4388339 (-) Length   317 a.a.
NCBI ID   WP_241929844.1    Uniprot ID   -
Organism   Paenibacillus sp. N3/727     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4382386..4393339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNQ98_RS20190 (MNQ98_20190) - 4383003..4384427 (-) 1425 WP_241929841.1 NAD-dependent succinate-semialdehyde dehydrogenase -
  MNQ98_RS20195 (MNQ98_20195) - 4384554..4385513 (-) 960 WP_241929842.1 siderophore ABC transporter substrate-binding protein -
  MNQ98_RS20200 (MNQ98_20200) - 4385697..4386455 (-) 759 WP_208918768.1 ABC transporter ATP-binding protein -
  MNQ98_RS20205 (MNQ98_20205) - 4386452..4387396 (-) 945 WP_241929843.1 iron chelate uptake ABC transporter family permease subunit -
  MNQ98_RS20210 (MNQ98_20210) ceuB 4387386..4388339 (-) 954 WP_241929844.1 ABC transporter permease Machinery gene
  MNQ98_RS20215 (MNQ98_20215) - 4388822..4389427 (+) 606 WP_241933988.1 nitroreductase family protein -
  MNQ98_RS20220 (MNQ98_20220) - 4389769..4390368 (+) 600 WP_241929845.1 Ykof family thiamine-binding protein -
  MNQ98_RS20225 (MNQ98_20225) - 4390561..4391274 (-) 714 WP_241929846.1 nucleotidyltransferase domain-containing protein -
  MNQ98_RS20230 (MNQ98_20230) - 4391417..4392139 (+) 723 WP_241929847.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35048.55 Da        Isoelectric Point: 10.0718

>NTDB_id=663780 MNQ98_RS20210 WP_241929844.1 4387386..4388339(-) (ceuB) [Paenibacillus sp. N3/727]
MNKRYLIAAVVVLSIISLFIGVKDISPLDLFRMTEQQQHIMLVSRIPRLISLILAGVSMSICGLIMQQLSRNKFVSPTTA
GTMDSARLGILVAMLVFSTTGPLIKMLVAFLFAFAGTMIFMKILDKIKFKDAVFIPLVGLMFGNIISSIATFFAYKYDLI
QNMSAWLQGDFSMIIKGQYELMYISVPLVILAYLFANKFTVAGMGEEFATNLGLRYRRVVNIGLIIVALVTASVVLTVGM
IPFLGLIVPNIVSLYLGDHLKKSLSHTALLGAAFVLFCDIIGRIIIYPYEIPISLTVGVIGSGIFIYLLMRRKAYDI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=663780 MNQ98_RS20210 WP_241929844.1 4387386..4388339(-) (ceuB) [Paenibacillus sp. N3/727]
ATGAATAAAAGATACTTGATTGCAGCAGTAGTGGTGTTATCCATTATTTCCTTATTCATAGGAGTAAAGGACATTTCACC
GCTTGACCTGTTCCGCATGACGGAGCAACAACAGCATATTATGCTAGTCAGTCGTATACCGAGGCTTATCAGTCTAATTC
TGGCGGGAGTCAGTATGAGTATTTGCGGCTTGATCATGCAGCAGCTCAGCAGGAACAAATTCGTATCTCCAACAACGGCA
GGGACTATGGATTCCGCAAGGCTGGGTATTCTGGTAGCGATGCTGGTGTTCTCAACCACGGGTCCTCTGATCAAAATGCT
GGTTGCATTCCTGTTTGCATTTGCAGGTACGATGATCTTTATGAAGATCCTCGACAAGATCAAATTCAAGGATGCCGTAT
TTATCCCGTTGGTTGGATTGATGTTCGGGAATATTATTAGCTCGATCGCTACATTTTTTGCCTATAAATATGATCTTATT
CAGAACATGTCTGCTTGGTTGCAGGGTGACTTCTCGATGATCATTAAGGGGCAGTACGAGCTGATGTACATAAGTGTTCC
TCTGGTCATTCTGGCTTACTTGTTCGCTAATAAGTTTACAGTGGCGGGCATGGGAGAGGAGTTCGCAACAAATCTGGGAC
TTCGTTACCGGAGAGTTGTTAACATCGGTTTGATCATTGTGGCTCTGGTGACAGCTTCAGTAGTTCTGACTGTAGGTATG
ATACCTTTCCTGGGGTTGATTGTACCAAACATCGTGAGTCTTTACTTGGGGGATCATTTGAAAAAAAGCCTTTCGCATAC
CGCACTGCTCGGGGCCGCATTTGTTCTCTTCTGCGACATCATCGGCCGAATTATCATTTATCCCTATGAAATTCCGATCA
GCTTAACCGTGGGTGTAATCGGAAGCGGTATATTCATTTACTTACTGATGAGGAGAAAGGCATATGACATATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.651

99.369

0.533