Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG199_RS28150 Genome accession   NZ_CP108600
Coordinates   6526855..6528588 (-) Length   577 a.a.
NCBI ID   WP_356808877.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01176     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6521855..6533588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG199_RS28140 (OG199_28140) - 6523517..6524830 (+) 1314 WP_405831830.1 RNA polymerase sigma factor -
  OG199_RS28145 (OG199_28145) rcrQ 6524927..6526855 (-) 1929 WP_356808878.1 ABC transporter ATP-binding protein Regulator
  OG199_RS28150 (OG199_28150) rcrP 6526855..6528588 (-) 1734 WP_356808877.1 ABC transporter ATP-binding protein Regulator
  OG199_RS28155 (OG199_28155) - 6528793..6530247 (-) 1455 WP_405831832.1 FGGY family carbohydrate kinase -
  OG199_RS28160 (OG199_28160) - 6530419..6530724 (-) 306 WP_356808876.1 YtxH domain-containing protein -
  OG199_RS28180 (OG199_28180) - 6531792..6532541 (-) 750 WP_405831834.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62674.89 Da        Isoelectric Point: 6.4238

>NTDB_id=663737 OG199_RS28150 WP_356808877.1 6526855..6528588(-) (rcrP) [Streptomyces sp. NBC_01176]
MLIRLLRTYLSPYKKPIALLVFLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVFCNIGAVYYGA
RTASAVGRDIRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSAI
LVAVVPILGIGVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFRGANTELTKMSLATGRMLAL
MFPMVMTVVNLSSIAVVWFGAHRIASGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLDTSSSVVP
PTAPVLELRRHGHLEIRGGGFRYPGAEEPVLKSIDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGQVLVDGEDVA
SVEPQLLARTVGLVPQKPYLFAGTVASNLRYGNPDATDEELWHALEVAQAKGFVEHLDNGLDSVIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAEETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=663737 OG199_RS28150 WP_356808877.1 6526855..6528588(-) (rcrP) [Streptomyces sp. NBC_01176]
GTGCTCATACGACTGCTTCGGACCTACCTCAGTCCGTACAAGAAACCCATCGCCCTCCTGGTGTTCCTGCAGTTCCTGCA
GACCTGCGCCACCCTCTACCTGCCGACCCTGAACGCGCACATCATCGACAACGGCGTGGTCAAGGGGGACACGGGATACA
TCCTGTCCTTCGGTGCCCTGATGATCGGGATCTCGCTGGTCCAGGTCTTCTGCAACATCGGAGCCGTCTACTACGGCGCC
CGGACGGCGTCGGCCGTCGGCCGGGACATCCGCGCGGCCGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGCGAGGTCGG
TCATTTCGGCGCTCCGTCACTGATCACCCGCACCACGAACGACGTGCAGCAGGTGCAGATGCTGGCACTGATGACGTTCA
CCCTGCTGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGCTCGCCCTCGGCCTGGACGTGCCGCTGTCCGCGATC
CTGGTCGCCGTCGTGCCCATCCTCGGTATCGGCGTGACGCTGATCGTGCGCAGACTGCGCCCGCTGTTCCGGACCATGCA
GGTGCGGCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGTGTCATCCGCGCCTTCGTCCGGGACG
ACTACGAGAAGGACCGCTTCCGGGGCGCGAACACCGAGCTGACCAAGATGTCCCTGGCCACCGGCCGGATGCTCGCACTG
ATGTTCCCGATGGTGATGACCGTCGTGAACCTCTCGTCGATCGCCGTGGTCTGGTTCGGTGCCCACCGCATCGCCAGTGG
CGGCATGCAGATCGGCGACCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGACACCTCCTCCAGCGTCGTGCCG
CCCACCGCGCCCGTCCTGGAGCTGCGTCGGCACGGCCATCTGGAGATCCGCGGCGGCGGGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTGAAGTCCATCGATCTGGTGGCGCGGCCGGGCGAGGTGACGGCCGTGATCGGGTCGACGGGCAGCGGCA
AGTCGACCCTCCTGGGTCTGGTCCCCCGTCTCTTCGACGCCACCGACGGCCAGGTGCTGGTGGACGGTGAGGACGTGGCG
AGCGTGGAGCCGCAGCTGCTGGCCAGGACGGTCGGGCTCGTCCCGCAGAAGCCGTACCTGTTCGCGGGCACGGTGGCGAG
CAACCTGCGCTACGGCAATCCGGACGCGACCGACGAGGAACTGTGGCACGCCCTGGAGGTGGCACAGGCCAAGGGGTTCG
TGGAACACCTGGACAACGGCCTGGACTCGGTGATCGCGCAGGGCGGCACAAATGTGTCGGGCGGTCAGCGCCAGCGCCTC
GCGATCGCGCGCACCCTCGTGCAACGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTCGACTACGCGACGGA
CGCGGCGCTGCGGGCCGCGCTCGCCGAGGAGACCGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GTGACGCCGACCGCATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCACCGGACGCCACCACGAACTGATGGCGGACAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.426

97.747

0.395