Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG199_RS28145 Genome accession   NZ_CP108600
Coordinates   6524927..6526855 (-) Length   642 a.a.
NCBI ID   WP_356808878.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01176     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6519927..6531855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG199_RS28130 (OG199_28130) - 6520046..6521311 (+) 1266 WP_401799073.1 NAD(P)/FAD-dependent oxidoreductase -
  OG199_RS28135 (OG199_28135) dnaG 6521358..6523268 (+) 1911 WP_405831828.1 DNA primase -
  OG199_RS28140 (OG199_28140) - 6523517..6524830 (+) 1314 WP_405831830.1 RNA polymerase sigma factor -
  OG199_RS28145 (OG199_28145) rcrQ 6524927..6526855 (-) 1929 WP_356808878.1 ABC transporter ATP-binding protein Regulator
  OG199_RS28150 (OG199_28150) rcrP 6526855..6528588 (-) 1734 WP_356808877.1 ABC transporter ATP-binding protein Regulator
  OG199_RS28155 (OG199_28155) - 6528793..6530247 (-) 1455 WP_405831832.1 FGGY family carbohydrate kinase -
  OG199_RS28160 (OG199_28160) - 6530419..6530724 (-) 306 WP_356808876.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69302.87 Da        Isoelectric Point: 6.3616

>NTDB_id=663736 OG199_RS28145 WP_356808878.1 6524927..6526855(-) (rcrQ) [Streptomyces sp. NBC_01176]
MAGPMGRMMAGGGPDQRSLDFKGSGKRLLAQFRPERVTLYVMLCAVVLSVGLSVVGPKILGKATDLVFAGIIGRQMPAGA
TKAEVLAGMRARGEGGMADMLSGTDFTPGKGIDFGAVGNVLLVALCTFLVAGLLMAVATRLVNRAVNKTVFHMREDLQAK
LSRLPLSYFDKRQRGEVLSRATNDLDNLQQTLQQSMGQLVNSLLTIVGVLAMMFWVSWLLALVALVTVPLSFFVATRIGK
RSQPHFVQQWRTTGQLNAHIEEMYTGHTLVKVFGRQEQSAAQFAEQNEKLYEAGFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANMVQSGVASAERVFELLDAEEQEADPVPAARPDELRGRVALH
NVSFRYDPEKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVTGGRITLDGVDIASMSRDELRSGIGMVLQDT
WLFGGTIAENIAYGASRDVTRGEIEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHAELLAAGGAYARLYQAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=663736 OG199_RS28145 WP_356808878.1 6524927..6526855(-) (rcrQ) [Streptomyces sp. NBC_01176]
ATGGCCGGGCCCATGGGACGCATGATGGCCGGGGGCGGCCCCGATCAGCGCTCGCTGGACTTCAAGGGATCCGGAAAACG
GCTCCTGGCGCAGTTCAGACCCGAACGCGTGACCCTGTACGTCATGCTGTGCGCGGTCGTGCTGAGCGTGGGGCTCTCGG
TGGTCGGACCGAAGATCCTCGGCAAGGCCACCGACCTGGTCTTCGCGGGGATCATCGGGCGGCAGATGCCGGCCGGGGCC
ACCAAGGCCGAGGTCCTCGCGGGCATGCGCGCGCGGGGCGAGGGCGGCATGGCCGACATGCTCTCGGGGACGGACTTCAC
CCCGGGCAAGGGCATCGACTTCGGCGCCGTCGGCAACGTACTGCTGGTCGCGCTCTGCACCTTCCTGGTGGCCGGACTGC
TGATGGCGGTGGCGACGCGCCTGGTGAACCGGGCCGTCAACAAGACCGTCTTCCACATGCGTGAGGACCTGCAGGCGAAG
CTGTCGCGCCTGCCCCTCTCGTACTTCGACAAGCGGCAGCGCGGCGAGGTGCTCTCGCGGGCCACCAACGACCTCGACAA
CCTCCAGCAGACGCTCCAGCAGTCGATGGGCCAGCTGGTGAACTCGCTGCTGACCATCGTGGGTGTGCTCGCGATGATGT
TCTGGGTGTCGTGGCTGCTGGCGCTCGTCGCGCTGGTCACCGTCCCGCTCTCCTTCTTCGTCGCCACCCGCATCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCCAGCTCAACGCGCACATCGAGGAGATGTACACCGGTCA
CACGCTGGTGAAGGTGTTCGGACGCCAGGAGCAGTCGGCCGCGCAGTTCGCGGAGCAGAACGAGAAGCTCTATGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGGTCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTACGTGCTGGTCGCG
GTGGTCGGCGGACTGCGGGTCGCGTCGGGCACGCTGTCGATCGGCGATGTGCAGGCCTTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACATGGTGCAGTCCGGGGTCGCCTCGGCGGAGCGCGTCTTCGAGC
TGCTGGACGCGGAGGAGCAGGAGGCGGATCCCGTCCCGGCGGCGCGTCCGGACGAGTTGCGCGGGCGGGTGGCGCTGCAC
AACGTGTCCTTCCGCTACGACCCCGAGAAGCCGCTCATCGAGGACCTGTCCCTGAAGGTGGAGCCCGGACACACGGTGGC
GATCGTCGGCCCGACGGGTGCGGGCAAGACGACGCTGGTGAACCTGCTGATGCGCTTCTACGACGTCACGGGCGGCCGGA
TCACGCTCGACGGGGTCGACATCGCGTCGATGTCCCGGGACGAACTGCGGTCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGGGCCTCGCGCGACGTGACCCGCGGGGAGATCGAGGAGGC
GGCGCGGGCGGCGCACGCGGACCGGTTCATCCGGACGCTGCCGGACGGCTACGACACCGTCATCGACGACGAGGGAAGCG
GGGTCAGCGCGGGTGAGAAGCAGCTGATCACCATCGCGCGCGCGTTCCTGTCCGATCCGGTGATCCTGGTGCTCGACGAG
GCGACCAGCTCCGTCGACACCCGCACCGAGGTGCTGATCCAGAAGGCGATGGCCAAACTGGCGCACGGGCGGACGTCGTT
CGTGATCGCACACCGGCTCTCCACGATCCGGGACGCGGACACCATCCTCGTGATGGAGAACGGGTCGATCGTGGAGCAGG
GGGCGCACGCGGAGCTGCTCGCGGCGGGCGGGGCCTACGCGCGGCTGTACCAGGCGCAGTTCGCCCAGGCGGTGGCCGAG
GTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(42-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.871

96.885

0.386