Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG199_RS13015 Genome accession   NZ_CP108600
Coordinates   3076449..3077225 (+) Length   258 a.a.
NCBI ID   WP_168530554.1    Uniprot ID   A0ABW3XD93
Organism   Streptomyces sp. NBC_01176     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3071449..3082225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG199_RS13000 (OG199_13000) - 3071676..3072209 (+) 534 WP_401801549.1 TerD family protein -
  OG199_RS13005 (OG199_13005) - 3072305..3075205 (-) 2901 WP_405829601.1 vitamin B12-dependent ribonucleotide reductase -
  OG199_RS13010 (OG199_13010) nrdR 3075356..3075919 (-) 564 WP_356805105.1 transcriptional regulator NrdR -
  OG199_RS13015 (OG199_13015) dinR/lexA 3076449..3077225 (+) 777 WP_168530554.1 transcriptional repressor LexA Regulator
  OG199_RS13020 (OG199_13020) - 3077417..3079447 (-) 2031 WP_405829603.1 ATP-dependent DNA helicase -
  OG199_RS13025 (OG199_13025) - 3079563..3081470 (-) 1908 WP_405829605.1 IucA/IucC family protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27951.62 Da        Isoelectric Point: 7.4755

>NTDB_id=663695 OG199_RS13015 WP_168530554.1 3076449..3077225(+) (dinR/lexA) [Streptomyces sp. NBC_01176]
MTTTADSATITAQDRSQGRLEPVHAMNEATNHEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYQPI
PGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=663695 OG199_RS13015 WP_168530554.1 3076449..3077225(+) (dinR/lexA) [Streptomyces sp. NBC_01176]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCACGAACCACGAGGGGCCCAAGCGTTCCCTGCCGGGCCGACCTCCAGGCATCCGCGCAGACAGCTCGGGACTCA
CCGACAGGCAGCGCCGGGTGATCGAGGTCATCAGGGACTCCGTGCAGCGACGCGGCTACCCGCCGTCGATGCGGGAGATC
GGACAGGCGGTCGGCCTCTCCAGCACCTCCTCGGTCGCACATCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGCCCGCGCGCGTACGAGGTCAGGGGCTCCGACCAGTCCTCGGCCCAGCCCACGGACACGGCGGGCAAGC
CGGCCGCGTCGTACGTCCCGCTCGTCGGCCGTATCGCCGCCGGCGGGCCCATCCTGGCCGAGGAGTCCGTGGAGGACGTC
TTCCCGCTCCCCCGGCAGCTGGTGGGTGACGGTGAGCTGTTCGTCCTCAAGGTCGTCGGTGACTCGATGATCGAGGCCGC
GATCTGTGACGGTGACTGGGTGACGGTCCGCCGCCAGCCCGTCGCGGAGAACGGTGACATCGTGGCCGCGATGCTGGACG
GCGAGGCCACCGTGAAGCGGTTCAAGCGCGAGGACGGTCATGTGTGGCTGCTCCCGCACAACTCCGCCTACCAGCCGATT
CCCGGCGACGAGGCGACCATCCTGGGCAAGGTGGTGGCCGTACTGCGGCGAGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.714

81.395

0.372