Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG543_RS23510 Genome accession   NZ_CP108592
Coordinates   5417542..5418339 (-) Length   265 a.a.
NCBI ID   WP_073767497.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01178     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5412542..5423339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG543_RS23500 (OG543_23510) - 5413254..5415305 (+) 2052 WP_405637551.1 IucA/IucC family protein -
  OG543_RS23505 (OG543_23515) - 5415344..5417314 (+) 1971 WP_073767499.1 ATP-dependent DNA helicase -
  OG543_RS23510 (OG543_23520) dinR/lexA 5417542..5418339 (-) 798 WP_073767497.1 transcriptional repressor LexA Regulator
  OG543_RS23515 (OG543_23525) nrdR 5418932..5419444 (+) 513 WP_309055207.1 transcriptional regulator NrdR -
  OG543_RS23520 (OG543_23530) - 5419618..5422515 (+) 2898 WP_073767493.1 vitamin B12-dependent ribonucleotide reductase -
  OG543_RS23525 (OG543_23535) - 5422705..5423241 (-) 537 WP_399762231.1 TerD family protein -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28720.47 Da        Isoelectric Point: 7.4760

>NTDB_id=663672 OG543_RS23510 WP_073767497.1 5417542..5418339(-) (dinR/lexA) [Streptomyces sp. NBC_01178]
MTTTADSATITARDHRSPSRLEPVHAMNDALTNTDGPDPARSGRSMPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFRREDGHVWLLPH
NAAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=663672 OG543_RS23510 WP_073767497.1 5417542..5418339(-) (dinR/lexA) [Streptomyces sp. NBC_01178]
GTGACCACCACCGCAGACAGCGCCACCATCACCGCCCGGGACCACCGCTCCCCGAGCCGACTTGAGCCGGTGCATGCCAT
GAATGACGCACTCACGAACACGGACGGGCCCGATCCCGCACGCTCCGGGCGCTCCATGCCCGGCAGGCCCCCGGGCATCC
GGGCGGACAGCTCCGGGCTCACCGACCGGCAGCGGCGGGTCATCGAGGTCATCCGCGACTCCGTGCAGCGGCGGGGCTAC
CCGCCCTCCATGCGGGAGATCGGCCAGGCGGTGGGCCTGTCCAGCACCTCGTCCGTCGCCCACCAGCTCATGGCGCTGGA
GCGCAAGGGATTCCTCCGCCGGGATCCGCACCGGCCCCGCGCCTACGAGGTGCGCGGATCGGACCAGCCCAGCACCCAGC
CGACCGACACGACGGGCAAGCCCGCCGCCTCCTATGTGCCGCTGGTGGGCCGGATCGCCGCCGGCGGCCCGATCCTCGCG
GAGGAGTCCGTCGAGGACGTCTTCCCCCTCCCCCGCCAGCTCGTGGGCGACGGTGAGCTGTTCGTGCTGAAGGTCGTCGG
CGACTCGATGATCGAAGCCGCGATCTGCGACGGCGACTGGGTGACCGTCCGCCGCCAGCCCGTCGCGGAGAACGGGGACA
TCGTCGCCGCCATGCTCGACGGCGAGGCGACGGTCAAGCGCTTCCGCCGGGAGGACGGCCACGTATGGCTGCTCCCGCAC
AACGCCGCGTACCAGCCGATCCCCGGCGACGAGGCGACCATCCTCGGCAAGGTGGTGGCGGTGCTGCGCCGGGTTTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(58-121)

Peptidase S24-like (Peptidase_S24)

(147-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80

0.37