Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MNO09_RS30930 Genome accession   NZ_CP093325
Coordinates   5517347..5518474 (-) Length   375 a.a.
NCBI ID   WP_000470743.1    Uniprot ID   A0A164MC53
Organism   Bacillus sp. N5-665     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5512347..5523474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNO09_RS30920 (MNO09_30740) gyrA 5512826..5515297 (-) 2472 WP_001282859.1 DNA gyrase subunit A -
  MNO09_RS30925 (MNO09_30745) gyrB 5515386..5517308 (-) 1923 WP_000435974.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  MNO09_RS30930 (MNO09_30750) recF 5517347..5518474 (-) 1128 WP_000470743.1 DNA replication/repair protein RecF Machinery gene
  MNO09_RS30935 (MNO09_30755) yaaA 5518487..5518699 (-) 213 WP_000821366.1 S4 domain-containing protein YaaA -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43363.72 Da        Isoelectric Point: 6.7809

>NTDB_id=663634 MNO09_RS30930 WP_000470743.1 5517347..5518474(-) (recF) [Bacillus sp. N5-665]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGMMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYENFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRA

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=663634 MNO09_RS30930 WP_000470743.1 5517347..5518474(-) (recF) [Bacillus sp. N5-665]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAGTTAGAGCTTTCCTTTGAAGATAAAGTGAATGT
GATTATCGGTGAAAACGCGCAAGGGAAAACGAATTTGATGGAAGCTATTTACGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAGCTTATCCGTTGGGATGAAGATTTCGGTCAAATTAAAGGGAAATTACAAAAGAGAAATAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAACAAAAATTGAGTCAATA
TATTGGCATGATGAATGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGTCAAATAGCTCCAGTCTATTTGTATGAATTGAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGCTGAAAAAGATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTGCAAAAATATTGCAAAAACGGTTTGAATTTTTGCATTTACTACAAGAATGGGCAGCTCCAATTCATCGCGGTA
TAAGCCGTGGATTAGAAGAATTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAATTTTCAATCTGTGAAACAACGTGAGATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTGT
CCCTAAAATTAGCTGAAATTGAATTAATTTACTCAGAAGTTAAGGAATATCCGATTCTTTTATTGGATGATGTATTATCA
GAATTAGATGATTATCGTCAATCGCATCTGTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTGACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGATA
GGGCGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A164MC53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653