Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MNO09_RS30730 Genome accession   NZ_CP093325
Coordinates   5480770..5481054 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus sp. N5-665     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5475770..5486054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNO09_RS30715 (MNO09_30535) rnmV 5476582..5477139 (-) 558 WP_000692830.1 ribonuclease M5 -
  MNO09_RS30720 (MNO09_30540) - 5477335..5478102 (-) 768 WP_000895824.1 TatD family hydrolase -
  MNO09_RS30725 (MNO09_30545) metG 5478268..5480250 (-) 1983 WP_000134146.1 methionine--tRNA ligase -
  MNO09_RS30730 (MNO09_30550) abrB 5480770..5481054 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MNO09_RS30735 (MNO09_30555) rsmI 5481075..5481950 (-) 876 WP_000267811.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  MNO09_RS30740 (MNO09_30560) - 5481919..5482209 (-) 291 WP_000414338.1 GIY-YIG nuclease family protein -
  MNO09_RS30745 (MNO09_30565) - 5482196..5482936 (-) 741 WP_001055375.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  MNO09_RS30750 (MNO09_30570) yabA 5483058..5483411 (-) 354 WP_000412057.1 DNA replication initiation control protein YabA -
  MNO09_RS30755 (MNO09_30575) - 5483426..5484253 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  MNO09_RS30760 (MNO09_30580) holB 5484259..5485242 (-) 984 WP_000169570.1 DNA polymerase III subunit delta' -
  MNO09_RS30765 (MNO09_30585) tmk 5485278..5485904 (-) 627 WP_000677224.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=663632 MNO09_RS30730 WP_000843036.1 5480770..5481054(+) (abrB) [Bacillus sp. N5-665]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=663632 MNO09_RS30730 WP_000843036.1 5480770..5481054(+) (abrB) [Bacillus sp. N5-665]
ATGAAATCTACTGGTATCGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGATGCTCTTGAAATCTACGTTGATGACGAGAAAATCATCTTAAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGATGGTAACCTATCTTTAGCTGAAGGTAAAATTATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851