Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MNO09_RS24525 Genome accession   NZ_CP093325
Coordinates   4273252..4273575 (+) Length   107 a.a.
NCBI ID   WP_000578867.1    Uniprot ID   -
Organism   Bacillus sp. N5-665     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4268252..4278575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNO09_RS24510 (MNO09_24370) - 4268769..4270136 (-) 1368 WP_000116791.1 aldehyde dehydrogenase -
  MNO09_RS24515 (MNO09_24375) inhA1 4270308..4272695 (-) 2388 WP_001035922.1 M6 family metalloprotease immune inhibitor InhA1 -
  MNO09_RS24520 (MNO09_24380) - 4273038..4273172 (+) 135 WP_000276217.1 anti-repressor SinI family protein -
  MNO09_RS24525 (MNO09_24385) sinR 4273252..4273575 (+) 324 WP_000578867.1 helix-turn-helix domain-containing protein Regulator
  MNO09_RS24530 (MNO09_24390) calY 4273651..4274244 (-) 594 WP_000053717.1 biofilm matrix protein CalY -
  MNO09_RS24535 (MNO09_24395) - 4274542..4275366 (-) 825 WP_000921207.1 DUF4047 domain-containing protein -
  MNO09_RS24540 (MNO09_24400) - 4275501..4276088 (-) 588 WP_000172832.1 CalY family protein -
  MNO09_RS24545 (MNO09_24405) sipW 4276151..4276720 (-) 570 WP_000767786.1 signal peptidase I SipW -
  MNO09_RS24550 (MNO09_24410) - 4276912..4278198 (-) 1287 WP_078182922.1 D-alanyl-D-alanine carboxypeptidase family protein -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12338.17 Da        Isoelectric Point: 8.5805

>NTDB_id=663617 MNO09_RS24525 WP_000578867.1 4273252..4273575(+) (sinR) [Bacillus sp. N5-665]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETAKENHLDSEWTQLV
KDAMSSGVSKEQFREFLEFTKWKHDQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=663617 MNO09_RS24525 WP_000578867.1 4273252..4273575(+) (sinR) [Bacillus sp. N5-665]
ATGATTGGAGAACGTATAAAACGCCTTCGCTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGTAATTTACAAAAAAACCCTTCCATTCAATTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTCTACTTCATGATGAAACAGCAAAGGAAAATCACTTAGACTCCGAATGGACACAACTCGTT
AAAGATGCGATGAGCTCCGGCGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACCAAATGGAAGCACGATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692