Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MNO09_RS23190 Genome accession   NZ_CP093325
Coordinates   4029198..4029800 (+) Length   200 a.a.
NCBI ID   WP_000155586.1    Uniprot ID   A0AB37YNX0
Organism   Bacillus sp. N5-665     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4024198..4034800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNO09_RS23145 (MNO09_23010) gpsB 4024326..4024664 (-) 339 WP_000622425.1 cell division regulator GpsB -
  MNO09_RS23150 (MNO09_23015) - 4024762..4025316 (-) 555 WP_000862919.1 DUF1273 domain-containing protein -
  MNO09_RS23155 (MNO09_23020) - 4025373..4025813 (-) 441 WP_000546280.1 CotD family spore coat protein -
  MNO09_RS23160 (MNO09_23025) - 4025970..4026500 (-) 531 WP_000487617.1 YppG family protein -
  MNO09_RS23165 (MNO09_23030) - 4026678..4026869 (+) 192 WP_000242661.1 YppF family protein -
  MNO09_RS23170 (MNO09_23035) - 4026895..4027239 (-) 345 WP_000872967.1 YppE family protein -
  MNO09_RS23175 (MNO09_23040) - 4027255..4027497 (-) 243 WP_001252042.1 hypothetical protein -
  MNO09_RS23180 (MNO09_23045) - 4027583..4027759 (+) 177 WP_001982922.1 hypothetical protein -
  MNO09_RS23185 (MNO09_23050) - 4028069..4029094 (-) 1026 WP_002096758.1 DUF2515 domain-containing protein -
  MNO09_RS23190 (MNO09_23055) recU 4029198..4029800 (+) 603 WP_000155586.1 Holliday junction resolvase RecU Machinery gene
  MNO09_RS23195 (MNO09_23060) - 4029866..4032541 (+) 2676 WP_001283136.1 PBP1A family penicillin-binding protein -
  MNO09_RS23200 (MNO09_23065) - 4032565..4033083 (-) 519 WP_000442664.1 YpoC family protein -
  MNO09_RS23205 (MNO09_23070) nth 4033087..4033734 (-) 648 WP_000933019.1 endonuclease III -
  MNO09_RS23210 (MNO09_23075) dnaD 4033750..4034457 (-) 708 WP_000728534.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23351.62 Da        Isoelectric Point: 9.4279

>NTDB_id=663615 MNO09_RS23190 WP_000155586.1 4029198..4029800(+) (recU) [Bacillus sp. N5-665]
MTIRYPNGKRYNQASHPHKTPIKKHTYSNRGMSLEEELNETNEYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVIAHNGIAFVIIKFTLFDELYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDTVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=663615 MNO09_RS23190 WP_000155586.1 4029198..4029800(+) (recU) [Bacillus sp. N5-665]
ATGACCATTCGTTACCCAAATGGAAAACGGTACAATCAAGCTTCACACCCTCATAAAACACCAATTAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATGAATATTACTTAACCCATAATATTGCATGCGTAC
ATAAAAAACCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATATAAAGGGAAATACATCGATTTTGAAGCGAAAGAAACAAAAAATAA
AACCAGCTTTCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTAATTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAACTTTATTTATTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGAAGAAAATCAATTACGAAAGAAGAAATAGAAGAGCATGGATCTTTATTATCGTGCGGTTATCACCCTCG
GATTGATTATATCCGTGTACTAGACACGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.682

100

0.64