Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MNO09_RS21150 Genome accession   NZ_CP093325
Coordinates   3616304..3616591 (-) Length   95 a.a.
NCBI ID   WP_000648329.1    Uniprot ID   A0A2A7D356
Organism   Bacillus sp. N5-665     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3611304..3621591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNO09_RS21130 (MNO09_21000) - 3611719..3612654 (-) 936 WP_000877954.1 aldo/keto reductase -
  MNO09_RS21135 (MNO09_21005) - 3612763..3613071 (+) 309 WP_001259914.1 helix-turn-helix transcriptional regulator -
  MNO09_RS21140 (MNO09_21010) galT 3613376..3614866 (-) 1491 WP_000640225.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  MNO09_RS21145 (MNO09_21015) - 3615078..3616028 (-) 951 WP_001089046.1 serine protease -
  MNO09_RS21150 (MNO09_21020) abrB 3616304..3616591 (-) 288 WP_000648329.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  MNO09_RS21155 (MNO09_21025) - 3616708..3618588 (-) 1881 WP_001025973.1 ABC transporter permease -
  MNO09_RS21160 (MNO09_21030) nadE 3618859..3619677 (+) 819 WP_000174887.1 ammonia-dependent NAD(+) synthetase -
  MNO09_RS21165 (MNO09_21035) - 3619723..3620184 (-) 462 WP_000024987.1 NUDIX hydrolase -
  MNO09_RS21170 (MNO09_21040) - 3620215..3620412 (-) 198 WP_002203457.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10591.31 Da        Isoelectric Point: 6.9795

>NTDB_id=663614 MNO09_RS21150 WP_000648329.1 3616304..3616591(-) (abrB) [Bacillus sp. N5-665]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
HLIKEIEKFLNKSEA

Nucleotide


Download         Length: 288 bp        

>NTDB_id=663614 MNO09_RS21150 WP_000648329.1 3616304..3616591(-) (abrB) [Bacillus sp. N5-665]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATCAAATCACCACTTGAAATTTTCGTAGAAGAAGATAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
CATTTAATAAAAGAAATAGAGAAGTTTTTAAATAAGAGTGAGGCTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A7D356

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.444

94.737

0.516