Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG708_RS30700 Genome accession   NZ_CP108591
Coordinates   6680252..6680920 (-) Length   222 a.a.
NCBI ID   WP_405564249.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01180     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6675252..6685920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG708_RS30685 (OG708_30595) - 6676034..6677539 (-) 1506 WP_327294299.1 phosphatase PAP2 family protein -
  OG708_RS30690 (OG708_30600) - 6677833..6679050 (+) 1218 WP_327294298.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  OG708_RS30695 (OG708_30605) - 6679082..6680221 (+) 1140 WP_327294297.1 MBL fold metallo-hydrolase -
  OG708_RS30700 (OG708_30610) vraR 6680252..6680920 (-) 669 WP_405564249.1 response regulator Regulator
  OG708_RS30705 (OG708_30615) - 6680917..6682239 (-) 1323 WP_327294295.1 sensor histidine kinase -
  OG708_RS30710 (OG708_30620) - 6682226..6683392 (-) 1167 WP_327294294.1 acyltransferase -
  OG708_RS30715 (OG708_30625) - 6683385..6684353 (-) 969 WP_327294293.1 alpha/beta hydrolase -
  OG708_RS30720 (OG708_30630) - 6684535..6685152 (-) 618 WP_405564254.1 DedA family protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23567.20 Da        Isoelectric Point: 4.9323

>NTDB_id=663606 OG708_RS30700 WP_405564249.1 6680252..6680920(-) (vraR) [Streptomyces sp. NBC_01180]
MTIRVLIADDQMMVRQGFTVLLNAEPDIEIVGQAVDGLDAIARVAELAPDVVLMDIRMPGLGGIEATRRITGPGGGAVRV
LVLTTFDLDEYVYEALRAGAAGFLLKDASADELARAVRVVAAGDALLAPNITKRLIAEFSRVTSSTRSAPKGRAGDLTER
ETEVLSLIAQGLSNAEIAGQLVVAEQTVKTHVSRILVKLGLRDRTQAAVFAYETGLVRPAGY

Nucleotide


Download         Length: 669 bp        

>NTDB_id=663606 OG708_RS30700 WP_405564249.1 6680252..6680920(-) (vraR) [Streptomyces sp. NBC_01180]
ATGACCATCCGGGTGCTGATTGCCGACGACCAGATGATGGTCCGCCAGGGTTTCACGGTGCTGCTCAACGCGGAGCCGGA
CATCGAGATCGTCGGCCAGGCCGTCGACGGCCTCGACGCCATCGCCCGGGTCGCCGAACTCGCCCCGGACGTCGTCCTGA
TGGACATCCGGATGCCCGGACTCGGCGGCATCGAGGCCACCCGCCGGATCACCGGCCCCGGCGGCGGGGCCGTGCGGGTC
CTGGTGCTGACGACCTTCGATCTGGACGAGTACGTGTACGAGGCGCTCCGCGCGGGCGCTGCGGGCTTCCTCCTGAAGGA
CGCGTCGGCGGACGAACTCGCCCGTGCCGTACGGGTGGTGGCCGCCGGTGACGCGCTGCTCGCCCCGAACATCACCAAAC
GCCTCATCGCCGAGTTCTCCCGGGTGACCAGCTCCACCCGCAGCGCGCCGAAGGGCCGGGCCGGCGATCTGACCGAGCGC
GAGACCGAGGTCCTCTCCCTCATCGCCCAGGGGCTGTCCAACGCGGAGATCGCCGGGCAGCTGGTGGTGGCGGAGCAGAC
CGTGAAGACCCATGTGAGCCGGATCCTGGTCAAGCTGGGCCTGCGCGACCGGACCCAGGCCGCGGTCTTCGCGTACGAGA
CGGGCCTGGTGCGCCCGGCCGGATACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(157-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.534

99.55

0.423
  degU Bacillus subtilis subsp. subtilis str. 168

41.518

100

0.419