Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG708_RS27850 Genome accession   NZ_CP108591
Coordinates   6025078..6025872 (-) Length   264 a.a.
NCBI ID   WP_327294875.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01180     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6020078..6030872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG708_RS27835 (OG708_27770) - 6020108..6020848 (+) 741 WP_327294878.1 GNAT family N-acetyltransferase -
  OG708_RS27840 (OG708_27775) - 6021092..6022897 (+) 1806 WP_327294877.1 IucA/IucC family siderophore biosynthesis protein -
  OG708_RS27845 (OG708_27780) - 6022937..6024907 (+) 1971 WP_327294876.1 ATP-dependent DNA helicase -
  OG708_RS27850 (OG708_27785) dinR/lexA 6025078..6025872 (-) 795 WP_327294875.1 transcriptional repressor LexA Regulator
  OG708_RS27855 (OG708_27790) nrdR 6026425..6026937 (+) 513 WP_327294874.1 transcriptional regulator NrdR -
  OG708_RS27860 (OG708_27795) - 6027063..6029948 (+) 2886 WP_327294872.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28580.35 Da        Isoelectric Point: 6.9854

>NTDB_id=663601 OG708_RS27850 WP_327294875.1 6025078..6025872(-) (dinR/lexA) [Streptomyces sp. NBC_01180]
MTTTADTATITAQDRSQNRLEPVHAMDDAATGSEGQLPPRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQTTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=663601 OG708_RS27850 WP_327294875.1 6025078..6025872(-) (dinR/lexA) [Streptomyces sp. NBC_01180]
GTGACCACGACCGCAGACACCGCCACCATCACCGCCCAGGACCGTTCGCAGAACCGACTCGAGCCGGTGCATGCCATGGA
TGACGCAGCAACGGGCTCCGAGGGCCAGCTGCCCCCGCGCCCAGCACGCTCGCTGCCCGGACGGCCTCCCGGTATCCGGG
CGGACAGCTCCGGGCTCACGGACCGGCAGCGGCGGGTGATCGAGGTGATCAGGGACTCCGTGCAGCGCCGCGGATACCCG
CCCTCCATGCGCGAGATCGGTCAGGCGGTGGGGCTGTCCAGCACCTCGTCGGTCGCCCACCAGCTGATGGCTCTGGAGCG
CAAGGGGTTCCTGCGCCGCGACCCGCACCGCCCCCGGGCGTACGAGGTCAGGGGCTCCGACCAGCCAAGCACCCAGACCA
CAGACACCACGGGCAAGCCCGCCGCGTCGTACGTCCCGCTGGTCGGCCGGATCGCCGCCGGTGGGCCCATCCTGGCCGAG
GAGTCGGTCGAGGACGTCTTCCCGCTCCCCCGGCAGCTCGTCGGCGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGTGA
CTCGATGATCGAGGCCGCGATCTGTGACGGCGACTGGGTCACGGTGCGGCGCCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCAGCCATGCTGGAGGGCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGGCATGTGTGGTTGCTGCCGCACAAC
GCCGCCTACCAGCCGATCCCCGGTGACGAAGCCACGATCCTCGGCAAGGTAGTGGCTGTACTCCGACGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371