Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   MNO09_RS03795 Genome accession   NZ_CP093325
Coordinates   318780..320129 (+) Length   449 a.a.
NCBI ID   WP_000879432.1    Uniprot ID   A0AB37Z0N8
Organism   Bacillus sp. N5-665     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 313780..325129
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNO09_RS03775 (MNO09_03725) - 314891..315526 (-) 636 WP_000926686.1 YigZ family protein -
  MNO09_RS03780 (MNO09_03730) - 315766..316608 (+) 843 WP_000844761.1 DegV family protein -
  MNO09_RS03785 (MNO09_03735) - 316781..317095 (+) 315 WP_000400858.1 helix-turn-helix domain-containing protein -
  MNO09_RS03790 (MNO09_03740) - 317242..318652 (+) 1411 Protein_298 NlpC/P60 family protein -
  MNO09_RS03795 (MNO09_03745) comFA 318780..320129 (+) 1350 WP_000879432.1 ATP-dependent helicase ComFA Machinery gene
  MNO09_RS03800 (MNO09_03750) - 320129..320833 (+) 705 WP_078183263.1 ComF family protein -
  MNO09_RS03805 (MNO09_03755) cspC 320960..321157 (+) 198 WP_001990088.1 cold shock protein CspC -
  MNO09_RS03810 (MNO09_03760) raiA 321478..322020 (+) 543 WP_000671193.1 ribosome-associated translation inhibitor RaiA -
  MNO09_RS03815 (MNO09_03765) - 322436..322918 (+) 483 WP_000023372.1 hypothetical protein -
  MNO09_RS03820 (MNO09_03770) - 323036..323602 (+) 567 WP_000864804.1 hypothetical protein -
  MNO09_RS03825 (MNO09_03775) - 323634..324422 (+) 789 WP_000120040.1 hypothetical protein -
  MNO09_RS03830 (MNO09_03780) - 324409..325104 (+) 696 WP_000466498.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51055.72 Da        Isoelectric Point: 9.7762

>NTDB_id=663592 MNO09_RS03795 WP_000879432.1 318780..320129(+) (comFA) [Bacillus sp. N5-665]
MLAGKQLLLEELSSDLRDTLHDLKKKRKVVYVQGVIKKASKYICQRCGNIEQRLFASFSCKRCSKVCTYCRKCITMGRVS
ECAVLVRGIAERKGEKGLNSLQWNGTLSTGQELAAQGVIEAIKQKESFFIWAVCGAGKTEMLFYGIAEALQKGERICIAT
PRTDVVLELAPRLQKVFPNVNVASLYGGSEDRDKDAALVVATTHQLLRYYRAFHVMVVDEIDAFPYYADQMLQYAVQQAM
KEKAARIYLTATPDEKWKHNFRSGKQKGIIVPGRYHRHPLPVPLFCWCGNWKKSLHHKRIPRVLLQWLEMYVNKKHPIFL
FVPHVRYIEELSLILKTLDPRIDGVHAEDPMRKEKVAAFRKGEIPLLVTTTILERGVTVKNLQVAVLGAEEEIFSESALV
QIAGRAGRSFEEPYGEVVYFHCGKTEAMVRAKRHIQSMNKKAKEQGLID

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=663592 MNO09_RS03795 WP_000879432.1 318780..320129(+) (comFA) [Bacillus sp. N5-665]
ATGTTAGCAGGGAAACAGTTACTATTAGAGGAACTCTCTTCAGATTTACGGGATACATTACATGATTTGAAAAAGAAGAG
GAAGGTCGTATATGTACAAGGCGTAATAAAGAAGGCTTCTAAATATATATGTCAGCGCTGCGGAAATATAGAGCAGCGGC
TATTTGCGTCATTTTCATGTAAAAGGTGCAGTAAAGTATGTACGTATTGCCGAAAGTGTATAACGATGGGGAGAGTTAGT
GAATGTGCTGTACTTGTTCGTGGGATCGCTGAAAGAAAAGGAGAAAAAGGTTTAAATTCTTTACAGTGGAACGGGACTTT
GTCTACCGGTCAGGAGTTGGCGGCGCAAGGTGTTATAGAAGCTATTAAGCAGAAAGAATCGTTTTTTATTTGGGCTGTGT
GCGGGGCTGGAAAAACTGAAATGCTGTTTTACGGTATTGCAGAGGCACTTCAAAAAGGAGAAAGAATTTGTATCGCAACG
CCAAGAACAGACGTTGTACTAGAATTAGCGCCGAGATTACAAAAAGTGTTTCCAAATGTAAATGTAGCGTCCTTATACGG
AGGAAGTGAAGATAGGGACAAAGATGCAGCGTTAGTCGTTGCAACGACTCATCAACTGTTACGTTACTATAGAGCGTTTC
ATGTCATGGTTGTAGATGAGATAGATGCCTTCCCGTATTATGCGGATCAAATGTTACAGTATGCAGTGCAACAAGCGATG
AAAGAGAAAGCGGCGCGTATTTATTTAACGGCAACTCCCGATGAAAAGTGGAAACATAATTTCAGAAGTGGTAAACAAAA
AGGTATCATTGTCCCTGGACGATACCATCGTCATCCGTTACCAGTTCCTCTATTTTGCTGGTGCGGAAATTGGAAGAAAA
GCCTCCATCATAAAAGAATTCCTCGAGTGTTACTACAATGGTTAGAAATGTACGTAAACAAAAAACATCCTATTTTTTTA
TTTGTTCCTCATGTGCGATATATAGAAGAATTGAGCCTGATATTGAAAACGTTGGATCCTAGAATCGATGGTGTACATGC
AGAAGATCCGATGAGAAAAGAAAAAGTAGCAGCTTTCAGAAAGGGAGAAATTCCTTTATTAGTTACAACGACAATTTTAG
AGAGAGGAGTAACTGTGAAGAATTTACAAGTTGCGGTGTTAGGGGCGGAAGAAGAAATCTTTTCAGAAAGTGCGCTCGTA
CAAATTGCAGGCCGAGCAGGTCGTAGTTTTGAAGAACCTTATGGTGAGGTCGTTTATTTTCATTGCGGTAAGACAGAGGC
GATGGTACGCGCGAAAAGGCATATTCAAAGTATGAACAAAAAGGCGAAAGAACAAGGGTTAATCGATTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(312-408)

Type III restriction enzyme, res subunit (ResIII)

(107-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

49.548

98.441

0.488
  comFA Latilactobacillus sakei subsp. sakei 23K

38.688

98.441

0.381