Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | AS4_RS01770 | Genome accession | NZ_AP014630 |
| Coordinates | 377305..377733 (+) | Length | 142 a.a. |
| NCBI ID | WP_096732782.1 | Uniprot ID | - |
| Organism | Acinetobacter guillouiae strain NBRC 110550 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 372305..382733
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AS4_RS01760 (AS4_03420) | - | 372853..376788 (+) | 3936 | WP_227548112.1 | PilC/PilY family type IV pilus protein | - |
| AS4_RS21915 (AS4_03430) | - | 376766..377299 (+) | 534 | WP_096732779.1 | type IV pilin protein | - |
| AS4_RS01770 (AS4_03440) | comF | 377305..377733 (+) | 429 | WP_096732782.1 | type IV pilin protein | Machinery gene |
| AS4_RS01775 (AS4_03450) | rpsP | 377879..378136 (+) | 258 | WP_004718284.1 | 30S ribosomal protein S16 | - |
| AS4_RS01780 (AS4_03460) | rimM | 378164..378712 (+) | 549 | WP_096732784.1 | ribosome maturation factor RimM | - |
| AS4_RS01785 (AS4_03470) | trmD | 378755..379495 (+) | 741 | WP_096732786.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| AS4_RS01790 (AS4_03480) | rplS | 379768..380139 (+) | 372 | WP_004718278.1 | 50S ribosomal protein L19 | - |
| AS4_RS01795 (AS4_03490) | - | 380203..381171 (-) | 969 | WP_096732788.1 | triacylglycerol lipase | - |
| AS4_RS01800 (AS4_03500) | - | 381435..382409 (-) | 975 | WP_096732790.1 | triacylglycerol lipase | - |
Sequence
Protein
Download Length: 142 a.a. Molecular weight: 15425.61 Da Isoelectric Point: 7.7676
>NTDB_id=66359 AS4_RS01770 WP_096732782.1 377305..377733(+) (comF) [Acinetobacter guillouiae strain NBRC 110550]
MKLKGFTLIELLIVVAIIGILAAIAYPAYQDYIIKTNRVDAQSEMLQIARNISNYKMAKGTFKDAKLENGAFEEDYPSVG
EAKYKVKLEVSKDNLTWSLNAAPIAGSQQAGNGDVGLDSQGQKCWSKGTTCTPSATTNWDGK
MKLKGFTLIELLIVVAIIGILAAIAYPAYQDYIIKTNRVDAQSEMLQIARNISNYKMAKGTFKDAKLENGAFEEDYPSVG
EAKYKVKLEVSKDNLTWSLNAAPIAGSQQAGNGDVGLDSQGQKCWSKGTTCTPSATTNWDGK
Nucleotide
Download Length: 429 bp
>NTDB_id=66359 AS4_RS01770 WP_096732782.1 377305..377733(+) (comF) [Acinetobacter guillouiae strain NBRC 110550]
ATGAAATTAAAAGGTTTTACTTTAATTGAGCTATTGATTGTTGTGGCAATTATAGGGATTTTGGCTGCGATAGCATATCC
AGCATATCAAGACTATATAATTAAGACCAATAGAGTTGATGCACAAAGTGAAATGCTTCAAATTGCCCGAAATATATCCA
ATTATAAAATGGCGAAAGGGACATTTAAAGATGCCAAATTGGAAAATGGAGCATTTGAAGAAGATTATCCAAGTGTTGGA
GAAGCAAAATATAAAGTTAAATTAGAAGTTTCTAAAGATAATTTAACTTGGTCTTTAAATGCTGCTCCAATAGCGGGTTC
TCAGCAAGCCGGAAATGGTGATGTCGGATTAGATAGCCAAGGCCAAAAATGTTGGAGCAAAGGTACCACTTGCACCCCAT
CAGCAACCACAAATTGGGACGGCAAATAA
ATGAAATTAAAAGGTTTTACTTTAATTGAGCTATTGATTGTTGTGGCAATTATAGGGATTTTGGCTGCGATAGCATATCC
AGCATATCAAGACTATATAATTAAGACCAATAGAGTTGATGCACAAAGTGAAATGCTTCAAATTGCCCGAAATATATCCA
ATTATAAAATGGCGAAAGGGACATTTAAAGATGCCAAATTGGAAAATGGAGCATTTGAAGAAGATTATCCAAGTGTTGGA
GAAGCAAAATATAAAGTTAAATTAGAAGTTTCTAAAGATAATTTAACTTGGTCTTTAAATGCTGCTCCAATAGCGGGTTC
TCAGCAAGCCGGAAATGGTGATGTCGGATTAGATAGCCAAGGCCAAAAATGTTGGAGCAAAGGTACCACTTGCACCCCAT
CAGCAACCACAAATTGGGACGGCAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Acinetobacter baylyi ADP1 |
47.917 |
100 |
0.486 |
| pilE | Acinetobacter baumannii D1279779 |
44.526 |
96.479 |
0.43 |