Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG708_RS18485 Genome accession   NZ_CP108591
Coordinates   3993413..3994543 (+) Length   376 a.a.
NCBI ID   WP_327296465.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01180     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3988413..3999543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG708_RS18470 (OG708_18420) dnaA 3988663..3990423 (+) 1761 WP_327296467.1 chromosomal replication initiator protein DnaA -
  OG708_RS18475 (OG708_18425) dnaN 3991262..3992392 (+) 1131 WP_266855224.1 DNA polymerase III subunit beta -
  OG708_RS18480 (OG708_18430) gnd 3992504..3993382 (+) 879 WP_327296466.1 phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) -
  OG708_RS18485 (OG708_18435) recF 3993413..3994543 (+) 1131 WP_327296465.1 DNA replication/repair protein RecF Machinery gene
  OG708_RS18490 (OG708_18440) - 3994540..3995130 (+) 591 WP_327296464.1 DciA family protein -
  OG708_RS18495 (OG708_18445) gyrB 3995498..3997561 (+) 2064 WP_327296463.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40956.75 Da        Isoelectric Point: 6.9322

>NTDB_id=663575 OG708_RS18485 WP_327296465.1 3993413..3994543(+) (recF) [Streptomyces sp. NBC_01180]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGANGQGKTNLVEAVGYLATLGSHRVSSDAPLVRMGADRAVIRAAVAQGERS
QLVELELNPGRANRARINRSSQVRPRDVLGIVRTVLFAPEDLALIKGDPGERRRFLDELITARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRSMDMSTLDVWDQHLGRVGAELLAQRLDLISTLQPLADKAYEQVAPGGGPVVLEYRSSLGEGIE
PVQSKDELYEHLIAALVGVRKQEIERGVTLVGPHRDDLVLKLGRLPAKGYASHGESWSYALALRLASYDLLRAEGNEPVL
VLDDVFAELDVRRRERLAELVAPGEQVLVTAAVDDDVPGVLAGVRFAVSDGAVDRV

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=663575 OG708_RS18485 WP_327296465.1 3993413..3994543(+) (recF) [Streptomyces sp. NBC_01180]
ATGCACGTCACGCACCTGTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTGCCTCTCGATCCGGGCGTCACCGC
GTTTGTGGGTGCCAACGGCCAGGGCAAGACGAACCTCGTCGAGGCGGTGGGCTATCTAGCGACTCTCGGCAGCCATCGGG
TCTCCTCCGATGCGCCGCTGGTACGGATGGGAGCCGACCGGGCTGTGATCCGTGCCGCGGTCGCTCAGGGCGAGCGGTCT
CAGCTCGTCGAGCTGGAACTCAATCCGGGCCGGGCCAACAGGGCCCGGATCAACCGCTCTTCGCAGGTCCGGCCGCGCGA
TGTCCTGGGGATCGTCCGGACTGTGCTTTTCGCGCCCGAGGATTTGGCCCTGATCAAAGGTGACCCGGGTGAGCGCCGCC
GGTTCCTGGATGAGCTGATCACGGCGCGTTCGCCACGGATGGCCGGGGTGCGCTCCGACTACGAGCGAGTGCTGAAGCAG
CGCAATACGCTCCTGAAGTCCGCGGCGATGGCCCGCAGGCACGGCGGCAGGTCCATGGACATGTCCACCCTCGATGTCTG
GGACCAGCATCTGGGGCGTGTGGGGGCTGAGTTGCTGGCTCAGCGGCTCGACCTGATTTCGACGTTGCAGCCGTTGGCCG
ACAAGGCGTACGAGCAGGTGGCCCCCGGTGGCGGGCCGGTTGTACTGGAGTACCGGAGCTCGCTGGGTGAAGGGATCGAA
CCGGTTCAGTCGAAGGACGAGCTGTACGAGCATCTGATCGCCGCCCTGGTGGGGGTCCGTAAGCAGGAGATCGAGCGCGG
CGTGACCCTGGTCGGCCCGCACCGCGACGACCTGGTGCTGAAGCTCGGCCGACTGCCGGCCAAGGGGTACGCCAGCCACG
GTGAGTCCTGGTCGTATGCGCTGGCGCTGCGGCTGGCTTCGTACGATTTGCTGCGGGCCGAGGGCAATGAGCCGGTGCTT
GTGCTCGACGATGTCTTCGCGGAGCTGGACGTGCGGCGCAGGGAGAGGCTTGCCGAGCTGGTGGCGCCCGGGGAACAGGT
GCTGGTCACGGCGGCAGTGGACGACGACGTGCCGGGTGTCCTGGCGGGCGTGCGGTTCGCGGTCTCAGACGGGGCGGTGG
ACCGGGTATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

38.202

94.681

0.362