Detailed information NTG0663570

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OG708_RS14660
• Genome accession: NZ_CP108591
• Coordinates: 3205321..3206301 (-)
• Length: 326 a.a.
• NCBI ID: WP_405561522.1
• Uniprot ID: -
• Organism: Streptomyces sp. NBC_01180
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3200321..3211301

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG708_RS14630 (OG708_14580)	-	3200710..3200985 (-)	276	WP_327297069.1	hypothetical protein	-
OG708_RS14635 (OG708_14585)	-	3201156..3202325 (+)	1170	WP_327297068.1	P1 family peptidase	-
OG708_RS14640 (OG708_14590)	-	3202483..3203229 (+)	747	WP_327297067.1	DUF6227 family protein	-
OG708_RS14645 (OG708_14595)	-	3203403..3204380 (-)	978	WP_327297066.1	YafY family protein	-
OG708_RS14650 (OG708_14600)	-	3204630..3204881 (+)	252	Protein_2892	MFS transporter	-
OG708_RS14655 (OG708_14605)	-	3204913..3205155 (+)	243	WP_405565752.1	hypothetical protein	-
OG708_RS14660 (OG708_14610)	rpoS	3205321..3206301 (-)	981	WP_405561522.1	RNA polymerase sigma factor RpoD/SigA	Regulator
OG708_RS14665 (OG708_14615)	-	3206512..3207039 (+)	528	WP_327297064.1	N-acetyltransferase family protein	-
OG708_RS14670 (OG708_14620)	-	3207143..3207922 (-)	780	WP_327297063.1	class III extradiol ring-cleavage dioxygenase	-
OG708_RS14675 (OG708_14625)	-	3208023..3208529 (+)	507	WP_327297062.1	MarR family transcriptional regulator	-
OG708_RS14680 (OG708_14630)	-	3208637..3210178 (-)	1542	WP_405561525.1	MFS transporter	-
OG708_RS14685 (OG708_14635)	-	3210572..3211210 (-)	639	WP_405561527.1	TetR/AcrR family transcriptional regulator	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 36553.24 Da
• Isoelectric Point: 4.9627

>NTDB_id=663570 OG708_RS14660 WP_405561522.1 3205321..3206301(-) (rpoS) [Streptomyces sp. NBC_01180]
MATRAVARRSDRASSVRAVGGEIADRDLVGMYLDEIARTPLLDAEKEVELSQTIEAGVYAQRILDGSVQSEAGGASRDEL
EALVAAGERAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIAD
QSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHEEIAAELDTKPERVSDVLDWARDPVSLNMPVDDQGETQFGDLLED
TSAVSPEQSVMTLLRSEELDELIGRLDHRTASIIKMRFGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKMADDV
GFDAAA

Nucleotide

• Length: 981 bp

>NTDB_id=663570 OG708_RS14660 WP_405561522.1 3205321..3206301(-) (rpoS) [Streptomyces sp. NBC_01180]
ATGGCAACCCGTGCCGTCGCCCGTCGATCCGACAGGGCAAGCAGCGTTCGCGCCGTAGGCGGGGAGATCGCCGACCGCGA
CCTGGTCGGCATGTACCTCGACGAAATAGCACGTACGCCGCTGCTCGACGCCGAAAAGGAGGTCGAGCTGTCCCAGACCA
TCGAGGCCGGGGTGTACGCCCAGCGGATCCTCGACGGTTCCGTGCAGAGTGAGGCGGGTGGGGCCTCGCGTGACGAGCTG
GAGGCGCTGGTTGCCGCCGGGGAGCGCGCCAAGGACGTCTTTATCCGGTCCAACCTGCGACTGGTCGTCGCGGTGGCCCG
CCGCTATCCGCGAGCAGGTCTGCCGCTTCTCGACCTGATCCAGGAGGGCAACGCGGGTCTGGTGCGCGCGGTCGAGAAGT
TCGACTACGCCAAGGGCTTCAAGTTCTCGACGTATGCGACCTGGTGGATCCGGCAGGCCATCACCCGGTCGATAGCCGAT
CAGTCCCGCACTATCCGGCTCCCTGTCCACCTGGTCGAGGAGCTGGGCCGGATCCGCCGTGTCCAGCGCGAATTCAACCG
CGAGCACGGCCGCGACCCGGAGCACGAGGAGATCGCCGCCGAGCTGGACACCAAGCCGGAGCGGGTGAGCGATGTGCTGG
ACTGGGCCCGTGACCCGGTCAGCCTGAACATGCCGGTGGACGACCAGGGCGAGACCCAGTTCGGTGATCTGCTGGAGGAC
ACGTCGGCGGTGTCGCCCGAGCAGTCCGTGATGACGCTGCTGCGCAGCGAGGAGCTCGACGAACTGATCGGCAGGCTCGA
TCACCGCACGGCTTCGATCATCAAGATGCGCTTCGGCATCGACGACGGCCGGGAGCGGACGCTGACCGAGGTCGGCAAGG
AGCACGGGCTGACGCGTGAGCGGATCCGTCAGATCGAGAAGCACGCGCTGCTCGAACTGAAGAAGATGGCCGACGATGTG
GGCTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (263-315)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 region 3 (Sigma70_r3) (173-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (27-60)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	40.667	92.025	0.374