Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   N023_RS08250 Genome accession   NZ_CP093321
Coordinates   1797733..1798449 (+) Length   238 a.a.
NCBI ID   WP_017279277.1    Uniprot ID   -
Organism   Pseudomonas syringae CC440     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1792733..1803449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N023_RS08230 (N023_08230) - 1792813..1793436 (+) 624 WP_004418610.1 glutathione S-transferase -
  N023_RS08235 (N023_08235) - 1793620..1794552 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  N023_RS08240 (N023_08240) - 1794549..1795337 (+) 789 WP_003421319.1 ABC transporter permease -
  N023_RS08245 (N023_08245) comA 1795474..1797690 (+) 2217 WP_024664694.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  N023_RS08250 (N023_08250) exbB 1797733..1798449 (+) 717 WP_017279277.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  N023_RS08255 (N023_08255) - 1798446..1798877 (+) 432 WP_003317468.1 biopolymer transporter ExbD -
  N023_RS08260 (N023_08260) lpxK 1798877..1799872 (+) 996 WP_024648606.1 tetraacyldisaccharide 4'-kinase -
  N023_RS08265 (N023_08265) - 1799890..1800075 (+) 186 WP_002552679.1 Trm112 family protein -
  N023_RS08270 (N023_08270) kdsB 1800072..1800836 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  N023_RS08275 (N023_08275) murB 1800871..1801890 (+) 1020 WP_017279274.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25790.32 Da        Isoelectric Point: 7.9113

>NTDB_id=663534 N023_RS08250 WP_017279277.1 1797733..1798449(+) (exbB) [Pseudomonas syringae CC440]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKVDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=663534 N023_RS08250 WP_017279277.1 1797733..1798449(+) (exbB) [Pseudomonas syringae CC440]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCATCGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCAC
CGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAAAGAAGCTGGACGGCGAAAAACTCAAGCAGCTGCGCGCTGAC
TCGCCGCTGGGCGAAATCCTTGCCGCAGGTCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGA
AGCCGCTGCCCGGGTCATTCATGAGCTGGAGCGCTACCTCAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGCTGCTTG
GTTTGCTAGGCACCGTGCTGGGCATGATCGATATCTTCGGCTCGTTCAACAGTTCCGGGGCCACCGCCAATGCCGGCGTG
CTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCGTCGGGTCTTATCGTCGCGATCCCGGCGATTTTCTTTCATCG
CTTCCTGCAGAGCCGCGTCGATGAGTTGGTGGTCGGCATGGAACAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAGGTCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693