Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG770_RS24065 Genome accession   NZ_CP108587
Coordinates   5350466..5351467 (-) Length   333 a.a.
NCBI ID   WP_405698088.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01185     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5345466..5356467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG770_RS24050 (OG770_24010) - 5345655..5345996 (+) 342 WP_405694673.1 DUF5713 family protein -
  OG770_RS24055 (OG770_24015) - 5346102..5348441 (-) 2340 WP_405694675.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  OG770_RS24060 (OG770_24020) - 5348479..5350413 (-) 1935 WP_405694677.1 cellulase family glycosylhydrolase -
  OG770_RS24065 (OG770_24025) cytR 5350466..5351467 (-) 1002 WP_405698088.1 LacI family DNA-binding transcriptional regulator Regulator
  OG770_RS24070 (OG770_24030) - 5351515..5352342 (-) 828 WP_329229080.1 carbohydrate ABC transporter permease -
  OG770_RS24075 (OG770_24035) - 5352357..5353298 (-) 942 WP_405694679.1 carbohydrate ABC transporter permease -
  OG770_RS24080 (OG770_24040) - 5353331..5354623 (-) 1293 WP_405694680.1 ABC transporter substrate-binding protein -
  OG770_RS24085 (OG770_24045) - 5354872..5355507 (-) 636 WP_405694682.1 TetR/AcrR family transcriptional regulator -
  OG770_RS24090 (OG770_24050) - 5355666..5356226 (+) 561 WP_405694684.1 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35024.03 Da        Isoelectric Point: 6.6111

>NTDB_id=663513 OG770_RS24065 WP_405698088.1 5350466..5351467(-) (cytR) [Streptomyces sp. NBC_01185]
MAAAAGVSTAAVSQAVNGTGRISEATRRRVMDAATELGWSPSASATALRRARTRTIALVVRRPTDVLGSDPHFSELITGL
EGELAPRGYGLLLHLVADMAQENALYERLVAEGRIDGAVLTDARADDPRPELLRSLGLPAVLLGAPDAASPVPRVGLGQQ
GAGIREAVAHLLELGHRRVAYVAGPAELLHTRLRLCAFEEALAEAGLGPVAVRHSEFTERAAVEVTEELLALPGRPTALV
FPNDSMAVCGIGTAQRAGLRVPDDLSVVGYDNLSLGRWVHPRLTTVDQQVQRVGAAAARTLLAGCGEDVPPPVLDGRPRL
VVRESTGPLRPPT

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=663513 OG770_RS24065 WP_405698088.1 5350466..5351467(-) (cytR) [Streptomyces sp. NBC_01185]
GTGGCCGCCGCGGCGGGTGTGTCCACCGCGGCGGTCTCCCAGGCCGTCAACGGCACCGGCCGGATCTCGGAGGCCACCCG
CCGCCGGGTCATGGACGCGGCCACCGAGCTGGGCTGGTCCCCGAGCGCCTCCGCGACGGCGCTGCGCCGGGCCCGTACCC
GTACGATCGCGCTCGTCGTCCGGCGCCCCACCGACGTGCTCGGCTCCGACCCGCACTTCAGCGAGCTGATCACCGGCCTG
GAGGGCGAACTCGCCCCGCGCGGCTACGGTCTGCTGCTCCACCTGGTCGCCGACATGGCGCAGGAGAACGCGCTGTACGA
GCGTCTGGTCGCCGAGGGCCGTATCGACGGTGCCGTGCTGACGGACGCCCGCGCCGACGACCCCCGCCCGGAACTGCTGC
GGAGCCTCGGACTGCCCGCCGTCCTGCTGGGCGCCCCCGACGCCGCCTCGCCCGTACCCCGGGTCGGGCTCGGGCAGCAG
GGCGCGGGCATAAGGGAGGCGGTCGCCCACCTGCTGGAGCTCGGCCACCGGCGCGTCGCCTACGTCGCGGGCCCGGCCGA
ACTCCTGCACACCCGGCTGCGTCTGTGCGCCTTCGAGGAGGCGCTGGCCGAGGCGGGGCTCGGGCCCGTCGCCGTACGGC
ACAGCGAGTTCACCGAGCGGGCCGCCGTGGAGGTCACCGAGGAGCTGCTCGCGCTGCCCGGCCGGCCGACGGCCCTCGTG
TTCCCCAACGACTCCATGGCCGTCTGCGGCATCGGCACGGCGCAGCGCGCCGGGCTCCGGGTGCCCGACGACCTGTCGGT
CGTCGGCTACGACAACCTCTCGCTCGGCCGCTGGGTGCACCCCCGGCTCACCACCGTCGACCAGCAGGTGCAGCGCGTCG
GCGCGGCCGCCGCCCGCACCCTGCTCGCCGGCTGCGGGGAGGACGTGCCCCCGCCGGTGCTCGACGGCCGCCCGCGCCTG
GTCGTACGCGAGTCGACCGGCCCGCTGAGACCCCCGACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(2-42)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.928

100

0.36