Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   MN086_RS08705 Genome accession   NZ_CP093312
Coordinates   1758251..1760041 (+) Length   596 a.a.
NCBI ID   WP_248575621.1    Uniprot ID   -
Organism   Sulfurovum sp. XGS-02     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1753251..1765041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN086_RS08690 (MN086_08690) nhaD 1754851..1756197 (-) 1347 WP_248575618.1 sodium:proton antiporter NhaD -
  MN086_RS08695 (MN086_08695) - 1756249..1757700 (-) 1452 WP_248575619.1 L-aspartate oxidase -
  MN086_RS08700 (MN086_08700) - 1757820..1758263 (+) 444 WP_248575620.1 DUF721 domain-containing protein -
  MN086_RS08705 (MN086_08705) uvrC 1758251..1760041 (+) 1791 WP_248575621.1 excinuclease ABC subunit UvrC Machinery gene
  MN086_RS08710 (MN086_08710) - 1760337..1760750 (+) 414 WP_248575622.1 PAS domain S-box protein -
  MN086_RS08715 (MN086_08715) - 1760773..1762170 (+) 1398 WP_248575623.1 hypothetical protein -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 68290.50 Da        Isoelectric Point: 9.0275

>NTDB_id=663483 MN086_RS08705 WP_248575621.1 1758251..1760041(+) (uvrC) [Sulfurovum sp. XGS-02]
MQSVIQDLPSCAGVYQYFDTSGKLLYVGKAKNLKNRVKSYWRFSPEFRPNPTQSSRIIKMLYEASRLEYIVVETEEDALI
LENSLIKQLKPKYNILLRDDKTYPYIYIDESVAYPRFEITRKVIKGKHITYYGPFPTGGKALLDALYEVYPLVQKKSCLK
EGKACLFYQIKKCLAPCEGKVSPEAYGEIVTQAKTSIVKRKDLLSTLEEKMTNLAMQERYEEAAAMRDSINAISSLTISS
NIDFANAMDLDIFAILNGDERGVIVKLFMRGGKIISSAYSYFRHTHIFDENEAYKQALLEFYTIDTPNISKQILTAHTFE
DSEQVSHSLSTRFDKKIEIVTPQRGPKAKLIALALQNCEELLRKTQSDTLMEQKIADLFDLSVIPYRVETFDNSHLMGAA
TVGGMVVWDEDKWDKSAYRRYTLHERDEYGQMKEMLSRRIENFKKEPAPDLWILDGGQANLNLAKALLEEAHVNLDVIAI
AKEKLDAKAHRAKGAAKDIIYTSHGVLELKANDKRLHWIQRQRDEAHRYAITYHQNKKRKEDTKISLLNKKGIGKATVKK
LIDYFGTFDAIENASSEEIEKVTNKKIANIIKNYNP

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=663483 MN086_RS08705 WP_248575621.1 1758251..1760041(+) (uvrC) [Sulfurovum sp. XGS-02]
ATGCAATCAGTAATCCAAGACCTCCCCTCCTGCGCAGGAGTGTACCAGTATTTTGATACAAGCGGTAAACTGCTCTATGT
AGGAAAAGCCAAAAACCTTAAGAACAGGGTCAAAAGCTATTGGCGTTTCTCTCCTGAATTCAGACCCAACCCTACGCAAA
GTTCCCGTATCATCAAAATGCTCTATGAAGCCAGTAGACTTGAGTACATCGTCGTAGAGACGGAAGAGGATGCGCTCATC
CTCGAAAACTCGCTCATCAAGCAGCTTAAACCCAAATACAACATTTTACTTCGTGACGATAAAACCTACCCCTACATCTA
TATCGATGAATCTGTTGCATATCCAAGGTTTGAAATTACCCGAAAGGTCATCAAAGGCAAACACATTACCTACTACGGCC
CTTTTCCTACCGGAGGAAAAGCCTTACTTGACGCACTCTATGAAGTCTATCCTCTTGTACAGAAAAAGTCTTGTCTAAAA
GAAGGGAAAGCCTGTCTCTTCTATCAGATCAAAAAGTGTCTGGCACCCTGTGAAGGAAAAGTGTCACCTGAAGCGTATGG
AGAGATAGTTACACAGGCCAAAACATCCATCGTCAAACGCAAAGACCTACTCTCCACTCTTGAGGAGAAGATGACAAACC
TTGCGATGCAGGAACGTTATGAAGAGGCAGCGGCTATGCGTGACAGTATCAATGCCATCTCTTCACTCACGATCTCATCA
AACATTGATTTTGCCAATGCAATGGATCTGGATATCTTTGCGATACTCAATGGGGATGAAAGAGGTGTCATCGTCAAGCT
CTTTATGCGGGGAGGAAAGATCATCTCATCGGCATACTCTTACTTCAGACATACCCATATTTTTGACGAGAATGAAGCCT
ATAAACAGGCGTTATTGGAATTCTATACCATCGATACCCCCAATATAAGCAAACAAATTCTTACGGCCCATACTTTTGAA
GACTCCGAACAGGTGTCACATAGCCTTTCTACCCGTTTTGATAAAAAAATAGAGATAGTTACACCGCAACGCGGTCCCAA
AGCCAAACTGATCGCTTTGGCCCTGCAAAACTGCGAAGAGCTACTGCGTAAAACACAGAGTGATACGCTCATGGAACAGA
AAATCGCTGATCTCTTTGACCTTTCCGTCATTCCTTACCGTGTAGAGACTTTCGATAACTCTCATCTTATGGGTGCAGCT
ACCGTAGGTGGTATGGTGGTGTGGGATGAAGATAAATGGGATAAATCCGCATATCGACGATACACGCTGCATGAGCGTGA
TGAGTATGGGCAGATGAAAGAGATGCTCTCTAGACGTATAGAGAACTTTAAAAAAGAACCTGCTCCGGACCTTTGGATAC
TTGATGGAGGACAGGCCAACCTCAATCTTGCAAAAGCCCTTCTTGAAGAAGCCCATGTCAACCTTGATGTCATAGCCATA
GCCAAAGAGAAGCTCGACGCCAAAGCACATCGTGCGAAAGGTGCAGCCAAAGACATAATCTATACCTCCCATGGCGTTCT
TGAGCTCAAAGCAAATGACAAACGCCTGCACTGGATACAGCGCCAAAGGGATGAAGCACATCGTTATGCCATCACCTACC
ATCAGAACAAAAAACGTAAAGAAGATACAAAAATTTCACTTCTCAATAAAAAAGGTATAGGCAAAGCAACGGTCAAAAAG
TTGATCGATTATTTCGGAACATTTGATGCCATAGAGAATGCATCTTCTGAAGAAATAGAAAAAGTTACAAATAAAAAAAT
TGCTAACATTATTAAAAATTATAATCCATAA

Domains

Predicted by InterproScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(377-531)

GIY-YIG catalytic domain (GIY-YIG)

(12-94)

UvrB/uvrC motif (UVR)

(201-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

48.896

98.826

0.483