Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MN086_RS02680 Genome accession   NZ_CP093312
Coordinates   534164..535516 (-) Length   450 a.a.
NCBI ID   WP_248576515.1    Uniprot ID   -
Organism   Sulfurovum sp. XGS-02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 529164..540516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN086_RS02650 (MN086_02650) - 529213..529920 (+) 708 WP_248576509.1 HlyD family secretion protein -
  MN086_RS02655 (MN086_02655) - 529978..531162 (+) 1185 WP_248576510.1 aspartate aminotransferase family protein -
  MN086_RS02660 (MN086_02660) - 531137..532333 (+) 1197 WP_248576511.1 TolC family protein -
  MN086_RS02665 (MN086_02665) - 532323..533309 (+) 987 WP_248576512.1 SAM-dependent methyltransferase -
  MN086_RS02670 (MN086_02670) - 533318..533692 (-) 375 WP_248576513.1 hypothetical protein -
  MN086_RS02675 (MN086_02675) acpS 533789..534139 (-) 351 WP_248576514.1 holo-ACP synthase -
  MN086_RS02680 (MN086_02680) radA 534164..535516 (-) 1353 WP_248576515.1 DNA repair protein RadA Machinery gene
  MN086_RS02685 (MN086_02685) - 535628..536413 (+) 786 WP_248576516.1 lysophospholipid acyltransferase family protein -
  MN086_RS02690 (MN086_02690) ftsY 536410..537276 (-) 867 WP_248576517.1 signal recognition particle-docking protein FtsY -
  MN086_RS02695 (MN086_02695) - 537283..537948 (-) 666 WP_248576518.1 TlpA disulfide reductase family protein -
  MN086_RS02700 (MN086_02700) - 538008..538571 (+) 564 WP_248576519.1 5-formyltetrahydrofolate cyclo-ligase -
  MN086_RS02705 (MN086_02705) rny 538664..540190 (+) 1527 WP_248576520.1 ribonuclease Y -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 49002.40 Da        Isoelectric Point: 6.5099

>NTDB_id=663480 MN086_RS02680 WP_248576515.1 534164..535516(-) (radA) [Sulfurovum sp. XGS-02]
MAKKKTLFECQACGFQSPRWMGKCTSCDQWETMVELSADQIKFLKETSGSSASGSAIPKAKPITQIEEDNIVRFTSGSKE
LDLVLGGGIVPGSLTLIGGSPGVGKSTLLLKIAGNLARASKKVLYVSGEESAGQIKLRANRLEANHENLFLLPEINLGSV
LSEIGNQTYELIVIDSIQTLYSDENPSAPGSVTQVRTITFELMRIAKSLQIPIFIIGHITKDGSIAGPRVLEHMVDTVLY
FEGDTNSDLRLLRGFKNRFGATNEVGIFEMNKEGLNDAKSMAGKFFNKDHLQSGSALTVIMEGSRPIIVEVQALVSESYG
HPKRSSTGFDNNRLGMLLALLEKKLDLPLGTYDVFINVSGGIKIHEPSADLAIIAAILSSYRDRKLSAETLFLGEVSLTG
EIREVSGLSQRLKEIETQGFTKAVIPNKPLEKTNIKCFVADEVSKVVEWM

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=663480 MN086_RS02680 WP_248576515.1 534164..535516(-) (radA) [Sulfurovum sp. XGS-02]
ATGGCAAAGAAAAAAACACTATTTGAATGTCAGGCATGTGGATTTCAATCTCCAAGATGGATGGGAAAATGTACTTCATG
TGATCAGTGGGAGACAATGGTCGAACTGAGTGCTGACCAAATTAAATTTTTGAAAGAGACTTCAGGTTCCAGTGCTTCAG
GTTCAGCTATTCCAAAAGCAAAACCGATCACACAGATAGAAGAGGATAATATTGTCCGTTTCACTTCAGGAAGCAAAGAA
CTGGACCTGGTACTGGGCGGAGGTATTGTCCCGGGTTCACTGACACTCATTGGAGGCAGTCCGGGTGTTGGGAAATCGAC
CCTTTTACTTAAGATAGCAGGAAACCTGGCCAGAGCATCAAAAAAGGTCCTGTATGTTTCTGGAGAAGAGTCTGCTGGAC
AGATAAAACTGCGTGCGAACAGACTTGAAGCAAACCATGAGAATCTTTTTCTGCTCCCGGAGATCAATCTTGGTTCCGTT
CTCTCAGAGATAGGAAACCAAACCTATGAACTTATCGTCATTGACTCCATACAAACCCTCTACTCTGATGAAAACCCCTC
TGCTCCAGGTTCGGTCACACAGGTACGTACGATCACTTTTGAGCTGATGCGTATTGCAAAGTCCCTACAGATCCCTATCT
TTATCATCGGGCATATCACAAAAGATGGTTCCATAGCAGGTCCCAGGGTCCTTGAACATATGGTGGATACGGTGCTCTAT
TTCGAAGGAGATACAAACTCCGATCTTCGTCTACTGCGTGGTTTTAAAAACCGTTTTGGCGCGACCAATGAAGTGGGTAT
ATTCGAAATGAACAAAGAGGGGTTGAACGATGCAAAAAGTATGGCAGGTAAATTCTTCAACAAAGACCATCTCCAGTCAG
GTTCGGCACTCACAGTCATCATGGAGGGGAGCCGTCCCATCATTGTAGAGGTTCAGGCATTGGTTTCAGAATCCTATGGA
CACCCTAAAAGAAGTTCTACCGGTTTTGATAACAATCGTCTTGGCATGCTTTTGGCGCTGCTCGAGAAGAAACTTGATCT
GCCTCTTGGTACCTATGATGTCTTTATCAATGTCTCAGGAGGGATAAAGATACATGAACCTTCTGCTGATCTTGCGATCA
TCGCAGCCATCTTAAGCAGCTATAGAGACAGGAAACTGAGTGCAGAGACACTTTTTCTGGGTGAAGTCAGTCTGACAGGT
GAGATACGTGAAGTCTCCGGACTCTCGCAGCGTCTCAAAGAGATCGAGACACAGGGATTTACAAAAGCTGTCATACCTAA
CAAGCCGCTTGAAAAAACGAACATTAAATGTTTTGTAGCCGATGAAGTCTCTAAAGTCGTTGAGTGGATGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-427)

AAA domain (AAA_25)

(80-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.345

96.667

0.487
  radA Streptococcus mitis SK321

46.207

96.667

0.447
  radA Streptococcus mitis NCTC 12261

46.207

96.667

0.447
  radA Streptococcus pneumoniae Rx1

46.207

96.667

0.447
  radA Streptococcus pneumoniae D39

46.207

96.667

0.447
  radA Streptococcus pneumoniae R6

46.207

96.667

0.447
  radA Streptococcus pneumoniae TIGR4

46.207

96.667

0.447