Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   PST29_RS26120 Genome accession   NZ_AP014628
Coordinates   5865387..5866754 (-) Length   455 a.a.
NCBI ID   WP_011063580.1    Uniprot ID   A0A2C9ETR8
Organism   Pseudomonas sp. St29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5860387..5871754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PST29_RS26095 (PST29_5309) yjiA 5860636..5861607 (-) 972 WP_060844683.1 GTPase -
  PST29_RS26100 (PST29_5310) - 5861721..5861918 (-) 198 WP_007937254.1 YbdD/YjiX family protein -
  PST29_RS26105 (PST29_5311) - 5861934..5864000 (-) 2067 WP_060841184.1 carbon starvation CstA family protein -
  PST29_RS26110 (PST29_5312) - 5864240..5864608 (+) 369 WP_060844684.1 PilZ domain-containing protein -
  PST29_RS26115 (PST29_5313) - 5864625..5865347 (-) 723 WP_148659677.1 hypothetical protein -
  PST29_RS26120 (PST29_5314) radA 5865387..5866754 (-) 1368 WP_011063580.1 DNA repair protein RadA Machinery gene
  PST29_RS26125 (PST29_5315) - 5866800..5867360 (-) 561 WP_060841187.1 ankyrin repeat domain-containing protein -
  PST29_RS26130 (PST29_5316) - 5867428..5868969 (-) 1542 WP_060844686.1 catalase -
  PST29_RS26135 (PST29_5317) mscL 5869257..5869670 (+) 414 WP_060841189.1 large-conductance mechanosensitive channel protein MscL -
  PST29_RS26140 (PST29_5318) - 5869720..5870496 (-) 777 WP_060841190.1 ferredoxin--NADP reductase -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48740.27 Da        Isoelectric Point: 7.1317

>NTDB_id=66339 PST29_RS26120 WP_011063580.1 5865387..5866754(-) (radA) [Pseudomonas sp. St29]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMIESGGAAAPAGRTGWAGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIATRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARVEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLKIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=66339 PST29_RS26120 WP_011063580.1 5865387..5866754(-) (radA) [Pseudomonas sp. St29]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCTCCACCTTTCCCAAATGGGCCGGGCAATGCGGTGAGTG
CGGGGCCTGGAACACCCTGACCGAGACCATGATCGAAAGTGGCGGCGCCGCGGCACCTGCCGGGCGCACCGGCTGGGCCG
GGCAGCAGGCGCAGATCAAGACCCTGGCGGAAGTCAGCGTCGAGGAAATCCCGCGTTTCTCCACCGCCTCCGGCGAACTC
GACCGGGTGCTGGGCGGTGGCCTGGTGGACGGTTCGGTGGTGCTGATCGGCGGCGATCCGGGGATCGGCAAGTCGACCAT
CCTGCTGCAGACCCTGTGCAATATCGCCACGCGCATGCCGGCGCTCTACGTCACCGGCGAGGAATCCCAGCAGCAGGTGG
CGATGCGCGCCCGGCGCCTGGGCCTGCCCCAGGATCAACTGCGGGTGATGACCGAAACCTGCATCGAAACCATCATCGCC
ACGGCCCGGGTGGAAAAGCCCAAGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAGCTGCAATCGGCCCC
GGGCGGCGTGTCCCAGGTGCGCGAGAGCGCGGCCTTGCTGGTGCGCTACGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TGGGCCACGTGACCAAGGAAGGCGCCCTGGCCGGGCCACGGGTGCTTGAGCACATGGTCGACACCGTGCTGTATTTCGAG
GGGGAGTCCGACGGTCGCCTGCGTTTGCTGCGGGCGGTGAAGAACCGTTTCGGTGCGGTCAATGAACTGGGCGTGTTCGG
CATGACCGACCGCGGTTTGAAGGAAGTCTCCAACCCTTCGGCGATTTTTCTCACCCGCGCCCAGGAAGAGGTGCCGGGCA
GCGTGGTGATGGCCACCTGGGAAGGTACCCGGCCGATGCTGGTGGAAGTTCAGGCGCTGGTGGATGACAGCCACCTGGCC
AACCCGCGCCGGGTGACCCTCGGCCTGGACCAGAACCGCCTGGCCATGCTGCTGGCGGTGTTGCATCGCCACGGCGGTAT
TCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTCAAGGTGCTGGAAACCGCGTCCGACCTGGCGCTGA
TGGCGGCGGTGATGTCGAGCCTGCGCAATCGTCCGCTGCCCCATGACTTGCTGGTGTTCGGCGAGGTGGGGCTGTCCGGC
GAAGTGCGTCCGGTGCCCAGCGGTCAGGAGCGCTTGAAAGAGGCGGCCAAGCATGGCTTCAAGCGGGCCATCGTGCCCAA
GGGCAACGCACCGAAGGAGGCACCGCCAGGCTTGAAGATCATTGCCGTTACCCGCCTGGAACAGGCGTTGGATGCGCTTT
TCGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C9ETR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

45.87

100

0.464
  radA Streptococcus pneumoniae R6

45.87

100

0.464
  radA Streptococcus pneumoniae TIGR4

45.87

100

0.464
  radA Streptococcus pneumoniae D39

45.87

100

0.464
  radA Streptococcus mitis SK321

46.053

100

0.462
  radA Streptococcus mitis NCTC 12261

45.833

100

0.459

Multiple sequence alignment