Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   MM326_RS14990 Genome accession   NZ_CP093302
Coordinates   2771795..2772748 (-) Length   317 a.a.
NCBI ID   WP_099301585.1    Uniprot ID   -
Organism   Alkalihalobacillus sp. LMS6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2766795..2777748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM326_RS14960 (MM326_14890) - 2766890..2767522 (+) 633 WP_255223657.1 deoxynucleoside kinase -
  MM326_RS14965 (MM326_14895) - 2767509..2768144 (+) 636 WP_255223658.1 deoxynucleoside kinase -
  MM326_RS14970 (MM326_14900) - 2768228..2768833 (-) 606 WP_099301581.1 restriction endonuclease -
  MM326_RS14975 (MM326_14905) - 2768964..2769941 (-) 978 WP_255223659.1 siderophore ABC transporter substrate-binding protein -
  MM326_RS14980 (MM326_14910) - 2770040..2770855 (-) 816 WP_099301583.1 ABC transporter ATP-binding protein -
  MM326_RS14985 (MM326_14915) - 2770852..2771805 (-) 954 WP_099301584.1 iron chelate uptake ABC transporter family permease subunit -
  MM326_RS14990 (MM326_14920) ceuB 2771795..2772748 (-) 954 WP_099301585.1 ABC transporter permease Machinery gene
  MM326_RS14995 (MM326_14925) - 2773066..2773689 (-) 624 WP_255223660.1 phosphatase PAP2 family protein -
  MM326_RS15000 (MM326_14930) - 2773857..2774000 (+) 144 WP_099301587.1 Fur-regulated basic protein FbpA -
  MM326_RS15005 (MM326_14935) - 2774014..2774502 (-) 489 WP_255223661.1 small multi-drug export protein -
  MM326_RS15010 (MM326_14940) - 2774734..2775105 (-) 372 WP_099301589.1 DUF1516 family protein -
  MM326_RS15015 (MM326_14945) - 2775175..2775669 (-) 495 WP_255223662.1 CcdC family protein -
  MM326_RS15020 (MM326_14950) cyoE 2775754..2776665 (-) 912 WP_099302152.1 heme o synthase -

Sequence


Protein


Download         Length: 317 a.a.        Molecular weight: 34825.10 Da        Isoelectric Point: 10.1241

>NTDB_id=663376 MM326_RS14990 WP_099301585.1 2771795..2772748(-) (ceuB) [Alkalihalobacillus sp. LMS6]
MKIKILLPILIVLSISSLFIGAHEISPLDLFRLTDEEVQTILINRVPRLLSILIVGVSLSVCGLIMQQLTQNKFVSPTTA
GTMDWARLGILVAMLVFSSASTMERMLVAFAFALGGTLLFMKILERIRFKNVIFVPLVGLMLGSVVNSITTFIAYQNDLI
QSLSSWMQGNFALIIRGNYELLYIGIPLVFIAFLFANRFTVAGLGKDFSTNLGMNYNRIMNIGLLIVAMVTATVVVTIGS
VPFLGLIIPNIVSIMRGDNLKNSLPHTALFGAIFLLACDILGRILIYPYEIPIGLMVGVIGSAIFLYLLLRRPKHAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=663376 MM326_RS14990 WP_099301585.1 2771795..2772748(-) (ceuB) [Alkalihalobacillus sp. LMS6]
ATGAAAATAAAGATTTTATTGCCGATTCTCATTGTGTTATCGATTAGTTCACTTTTTATTGGTGCCCATGAAATTTCACC
ACTTGATCTTTTTCGTTTAACGGATGAAGAAGTCCAGACTATATTAATTAATCGAGTGCCAAGACTTTTGAGCATTCTCA
TTGTAGGCGTTAGTTTAAGTGTGTGCGGGTTAATTATGCAGCAACTAACGCAAAATAAATTTGTCTCGCCAACGACAGCA
GGAACGATGGACTGGGCGCGTTTAGGCATTTTAGTTGCGATGCTCGTTTTTTCATCAGCAAGCACGATGGAGCGTATGCT
CGTTGCCTTTGCTTTTGCTTTAGGTGGAACGCTTTTATTTATGAAAATTTTAGAGCGTATTCGCTTTAAAAATGTCATCT
TTGTCCCACTAGTTGGTTTAATGCTTGGAAGTGTTGTGAATTCTATTACGACGTTTATTGCATACCAAAATGATTTAATT
CAATCCCTCTCCTCTTGGATGCAAGGAAACTTTGCTTTAATCATAAGAGGAAATTATGAACTTCTTTACATAGGTATACC
CTTAGTATTCATCGCGTTTCTTTTTGCAAACCGCTTTACGGTTGCAGGCTTAGGAAAAGATTTCTCGACAAATCTAGGGA
TGAACTACAATCGCATTATGAACATCGGTTTATTAATTGTGGCGATGGTAACCGCAACAGTTGTTGTAACAATTGGTTCT
GTTCCATTTTTAGGACTCATCATACCAAATATTGTTTCAATCATGCGTGGAGATAATTTGAAAAATAGTTTACCGCACAC
AGCATTATTTGGAGCCATTTTCTTACTTGCCTGCGATATTTTAGGTCGAATCCTTATCTATCCTTACGAGATTCCAATTG
GCTTAATGGTTGGCGTCATTGGGAGCGCAATTTTCCTTTATCTGCTCTTAAGGAGGCCAAAACATGCAAGCTAA

Domains


Predicted by InterproScan.

(9-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.051

99.685

0.489