Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG220_RS29280 Genome accession   NZ_CP108582
Coordinates   6585992..6586789 (-) Length   265 a.a.
NCBI ID   WP_326687570.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01187     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6580992..6591789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG220_RS29270 (OG220_29270) - 6581965..6583704 (+) 1740 WP_326692681.1 IucA/IucC family siderophore biosynthesis protein -
  OG220_RS29275 (OG220_29275) - 6583800..6585782 (+) 1983 WP_405805823.1 ATP-dependent DNA helicase -
  OG220_RS29280 (OG220_29280) dinR/lexA 6585992..6586789 (-) 798 WP_326687570.1 transcriptional repressor LexA Regulator
  OG220_RS29285 (OG220_29285) nrdR 6587250..6587909 (+) 660 WP_326687569.1 transcriptional regulator NrdR -
  OG220_RS29290 (OG220_29290) - 6588076..6590973 (+) 2898 WP_326687568.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28537.19 Da        Isoelectric Point: 6.5016

>NTDB_id=663376 OG220_RS29280 WP_326687570.1 6585992..6586789(-) (dinR/lexA) [Streptomyces sp. NBC_01187]
MTTTADSATITSQNRSAQAIDEIQPVNDAMNAETQEGPQAKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDTPSTAQAAADTTGKPSASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGDLFVLKVIGDSMVEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPH
NASYQPIPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=663376 OG220_RS29280 WP_326687570.1 6585992..6586789(-) (dinR/lexA) [Streptomyces sp. NBC_01187]
GTGACCACGACAGCAGACAGCGCCACCATCACCTCCCAGAACCGCTCAGCGCAGGCAATCGACGAGATTCAGCCGGTGAA
TGACGCCATGAACGCAGAGACTCAGGAAGGTCCACAGGCGAAGCGCTCGCTGCCAGGGCGACCTCCCGGCATCCGGGCGG
ACAGTTCCGGGCTCACGGACCGGCAGCGACGGGTGATCGAGGTGATCCGCGACTCCGTCCAGCGGCGCGGCTACCCGCCG
TCCATGCGCGAGATCGGCCAGGCCGTGGGCCTCTCCAGCACCTCCTCGGTGGCGCACCAGCTCATGGCACTGGAGCGGAA
GGGTTTCCTCCGTCGTGACCCGCACCGCCCTCGCGCCTACGAGGTGCGCGGCTCGGACACGCCCAGCACGGCGCAGGCCG
CGGCCGACACGACAGGCAAGCCGTCCGCCTCCTACGTCCCGCTGGTGGGCCGGATCGCAGCCGGGGGGCCCATCCTCGCC
GAGGAGTCGGTCGAGGATGTCTTCCCGCTGCCACGCCAGCTCGTCGGCGACGGCGATCTGTTCGTCCTCAAGGTCATCGG
AGATTCGATGGTCGAGGCCGCGATCTGCGACGGGGACTGGGTCACCGTCAGGCGCCAGCCGGTTGCCGAGAACGGCGACA
TCGTGGCCGCGATGCTCGACGGGGAGGCGACCGTCAAGCGCTTCAAGCGCGAGGACGGGCACGTCTGGCTGTTGCCGCAC
AACGCCTCGTACCAGCCGATCCCGGGCGATGACGCCACCATCCTCGGCAAGGTCGTCGCCGTACTGCGGAGGGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(56-119)

Peptidase S24-like (Peptidase_S24)

(147-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

44.86

80.755

0.362