Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MM326_RS12550 Genome accession   NZ_CP093302
Coordinates   2339939..2341618 (-) Length   559 a.a.
NCBI ID   WP_255223418.1    Uniprot ID   -
Organism   Alkalihalobacillus sp. LMS6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2334939..2346618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM326_RS12530 (MM326_12475) - 2336337..2336585 (+) 249 WP_099301236.1 DUF2627 domain-containing protein -
  MM326_RS12535 (MM326_12480) - 2336608..2337360 (-) 753 WP_099301237.1 hypothetical protein -
  MM326_RS12540 (MM326_12485) spo0A 2337501..2338292 (-) 792 WP_099301238.1 sporulation transcription factor Spo0A -
  MM326_RS12545 (MM326_12490) spoIVB 2338526..2339821 (-) 1296 WP_369682410.1 SpoIVB peptidase -
  MM326_RS12550 (MM326_12495) recN 2339939..2341618 (-) 1680 WP_255223418.1 DNA repair protein RecN Machinery gene
  MM326_RS12555 (MM326_12500) argR 2341637..2342086 (-) 450 WP_099301241.1 transcriptional regulator AhrC/ArgR -
  MM326_RS12560 (MM326_12505) - 2342276..2343091 (-) 816 WP_255223419.1 TlyA family RNA methyltransferase -
  MM326_RS12565 (MM326_12510) dxs 2343098..2344984 (-) 1887 WP_099301243.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MM326_RS12570 (MM326_12515) - 2345149..2346033 (-) 885 WP_099301244.1 polyprenyl synthetase family protein -
  MM326_RS12575 (MM326_12520) xseB 2346030..2346233 (-) 204 WP_255225372.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 559 a.a.        Molecular weight: 62977.72 Da        Isoelectric Point: 4.7329

>NTDB_id=663369 MM326_RS12550 WP_255223418.1 2339939..2341618(-) (recN) [Alkalihalobacillus sp. LMS6]
MLMELTVKNFAIISSLTIPFEKGLTVLTGETGAGKSIIIDAIGLLLGGRGSVEFVRHGEKKAEIEGLFIIEDARHIEAKL
ESLGIDMEDDMLIMRREITHTGKSICRINGKLMTIGTLREIGQALVDIHGQHEHQALMREDEHLSLLDQFGGDTLKKALN
EYRKLFTKLETTNKRIKELDQNAQEIAQKTDLYTYQLGEISKINLQVGEDDQLLKDRNKLANSEKLFESLTRSYEHLYGE
DKGLDYLSGMLSHLESAAGIDEDLQPLFEQMSSSYYLIEEASYSIREALDQVDFNPSLLEEVENRLAEIEKLKRKYGSSV
KDILTYAETIERELEEMENKDIHLEDLQDTRNAIIEDLTIESETITKIRKQLAQQLEAALMTELSQLYMEKASFHVELKQ
TDSFYKNGQDQAAFLISTNQGEPLKSLIKVASGGEISRIMLALKTIFSASQNLTSVIFDEVDTGVSGRVAQAIAEKMYHI
SVGSQVLCITHLPQVAAMADQHLFIRKENKADRVKTEVISLNEEEKTNELARMLSGFEVTDITKENAKELLALASHKKT

Nucleotide


Download         Length: 1680 bp        

>NTDB_id=663369 MM326_RS12550 WP_255223418.1 2339939..2341618(-) (recN) [Alkalihalobacillus sp. LMS6]
ATGTTAATGGAATTAACCGTTAAGAATTTTGCGATCATCTCTTCTCTTACCATTCCATTTGAAAAAGGGTTAACCGTTTT
AACTGGAGAGACGGGAGCCGGGAAATCAATCATTATTGATGCAATCGGTTTGCTTTTAGGTGGGCGAGGATCGGTAGAAT
TTGTTCGTCACGGAGAGAAAAAAGCGGAAATTGAAGGCTTATTTATTATTGAAGATGCCCGTCATATTGAAGCGAAATTA
GAATCATTAGGAATTGACATGGAAGACGATATGCTCATTATGAGGCGAGAAATTACCCATACAGGAAAAAGCATTTGTCG
CATAAATGGAAAGCTTATGACGATCGGTACATTGCGAGAAATCGGACAGGCCCTTGTTGATATCCATGGTCAACATGAAC
ACCAAGCGCTCATGCGCGAAGACGAGCACCTTTCATTATTGGATCAATTCGGTGGAGATACGCTCAAAAAAGCGCTAAAT
GAATACCGAAAGCTTTTTACGAAACTGGAAACGACAAACAAACGAATCAAAGAATTGGATCAAAACGCACAAGAAATTGC
GCAAAAGACCGATTTGTATACGTATCAACTTGGTGAAATTTCCAAAATAAATTTGCAGGTTGGAGAAGACGATCAGCTTT
TAAAAGATCGTAACAAGCTTGCCAACAGTGAGAAATTATTTGAGTCTCTGACGCGTAGTTATGAACATTTATACGGGGAA
GACAAAGGGCTCGATTATCTAAGCGGAATGCTTAGTCATCTTGAAAGTGCCGCTGGCATTGACGAAGACCTGCAGCCTCT
CTTTGAACAAATGTCGTCAAGTTACTATTTAATTGAAGAAGCTTCTTATTCAATTCGCGAGGCATTGGATCAAGTTGATT
TTAACCCCTCCTTACTCGAAGAGGTAGAAAATCGTTTAGCAGAAATTGAGAAGTTAAAGCGGAAATACGGCTCATCGGTA
AAAGACATTCTTACATATGCAGAAACCATTGAGCGCGAATTAGAGGAAATGGAAAATAAAGATATTCATTTAGAGGACTT
GCAAGATACAAGAAACGCCATCATCGAAGACTTAACAATTGAATCTGAAACCATAACGAAAATCCGAAAACAATTAGCAC
AGCAGTTAGAGGCAGCTTTGATGACGGAATTAAGCCAACTTTACATGGAGAAGGCATCCTTTCATGTTGAGTTAAAGCAA
ACAGATTCCTTTTATAAAAATGGACAAGATCAAGCTGCTTTTTTAATTTCAACAAACCAAGGCGAACCATTAAAATCATT
AATTAAAGTGGCTTCCGGCGGAGAAATATCACGAATTATGCTAGCGCTAAAAACGATTTTTTCGGCTTCTCAAAACCTTA
CTTCTGTTATTTTTGATGAAGTGGACACAGGCGTAAGTGGTCGCGTTGCACAAGCCATCGCTGAAAAGATGTATCATATT
TCTGTTGGTTCACAAGTATTATGTATTACACATTTGCCGCAAGTTGCTGCAATGGCTGATCAACATTTATTTATTAGAAA
AGAAAATAAAGCAGACCGTGTAAAAACAGAAGTGATTTCATTAAATGAAGAAGAAAAAACAAATGAACTTGCTCGAATGC
TTTCTGGATTTGAAGTAACGGACATTACTAAAGAAAATGCAAAAGAATTATTAGCATTAGCAAGTCACAAAAAAACGTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.568

100

0.53