Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   OG220_RS22975 Genome accession   NZ_CP108582
Coordinates   5149097..5151052 (+) Length   651 a.a.
NCBI ID   WP_327392701.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5144097..5156052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG220_RS22955 (OG220_22940) - 5144357..5146003 (+) 1647 WP_326688660.1 NADH-quinone oxidoreductase subunit M -
  OG220_RS22960 (OG220_22945) nuoN 5146000..5147655 (+) 1656 WP_326688659.1 NADH-quinone oxidoreductase subunit NuoN -
  OG220_RS22965 (OG220_22950) - 5147810..5148193 (+) 384 WP_326688658.1 cupin domain-containing protein -
  OG220_RS22970 (OG220_22955) - 5148327..5148884 (-) 558 WP_326688657.1 hypothetical protein -
  OG220_RS22975 (OG220_22960) recQ 5149097..5151052 (+) 1956 WP_327392701.1 DNA helicase RecQ Machinery gene
  OG220_RS22980 (OG220_22965) - 5151087..5151437 (-) 351 WP_326688655.1 hypothetical protein -
  OG220_RS22985 (OG220_22970) - 5151978..5152538 (+) 561 WP_326688654.1 SigE family RNA polymerase sigma factor -
  OG220_RS22990 (OG220_22975) - 5152535..5153260 (+) 726 WP_326807781.1 hypothetical protein -
  OG220_RS22995 (OG220_22980) - 5153392..5154591 (-) 1200 WP_326807780.1 right-handed parallel beta-helix repeat-containing protein -
  OG220_RS23000 (OG220_22985) fahA 5154734..5155945 (-) 1212 WP_326807779.1 fumarylacetoacetase -

Sequence

Protein


Download         Length: 651 a.a.        Molecular weight: 70662.08 Da        Isoelectric Point: 5.1246

>NTDB_id=663357 OG220_RS22975 WP_327392701.1 5149097..5151052(+) (recQ) [Streptomyces sp. NBC_01187]
MLRESAEESGGAPEPDVLRVLRKVFGYDAFRGEQEAVIEHVTRGGDAVVLMPTGGGKSLCYQIPALVRPGTGVVISPLIA
LMQDQVDALRGLGVRAGFINSTLDFDERRVVEAEFLAGELDLLYLAPERLRLEATTALLERGKVSLFAIDEAHCVAQWGH
DFRPDYLSLSMLGERWPEVPRVALTATATRATHREIVERLGLSGARDFVASFDRPNIQYRVVPKRDPKKQLLRFLKEEHA
GDAGIVYCLSRNGVERTAEFLCRNGIEAVPYHAGLDAGTRAAHQSRFLREEGLVVVATIAFGMGIDKPDVRFVAHLDLPK
SVEGYYQETGRAGRDGEPSTAWLAYGLQDVVQQRKLIEGGEGDPAFQRRARAHLDAMLSLCESVRCRRAQLLEYFDQEPA
AGTTDVACGNCDTCLTPPETWDGTVPAQKALSCVVRLKRERGQKFGAGQIVDILLGRKTAKVIQFDHDGLKVFGIGADLG
EAEWRGIVRQLLAQGLLEVEGEHGTLVLTDASAEVLRGEREVRLRKDTAPAKAEGGGRGERSGRGGGKAAAAAADLPEEA
KPLFEALRAWRGEQAREQGVPAYVVFHDATLREIATQRPGTLGELGGIGGVGEKKLANYGEGILEVLAGPSGPEPEQEPE
PDPEPEPEPAS

Nucleotide


Download         Length: 1956 bp        

>NTDB_id=663357 OG220_RS22975 WP_327392701.1 5149097..5151052(+) (recQ) [Streptomyces sp. NBC_01187]
ATGCTTCGAGAGAGTGCCGAGGAGTCCGGCGGGGCGCCGGAGCCGGACGTGCTGCGCGTGCTGCGCAAGGTGTTCGGCTA
CGACGCGTTCCGCGGCGAGCAGGAAGCCGTCATCGAGCACGTGACGCGCGGTGGCGACGCGGTCGTGCTGATGCCGACCG
GCGGCGGCAAGTCGCTCTGCTACCAGATCCCGGCGCTGGTCAGACCAGGTACAGGCGTGGTGATCTCGCCCCTGATCGCC
CTGATGCAGGACCAGGTGGACGCGCTGCGGGGGCTGGGTGTGCGCGCCGGGTTCATCAACTCGACGCTGGACTTCGACGA
GCGCCGCGTGGTGGAGGCCGAATTCCTCGCCGGTGAGCTGGACCTGCTGTATCTGGCCCCCGAGCGGCTGCGCCTGGAGG
CGACGACCGCTCTGCTGGAGCGCGGCAAGGTGTCGCTCTTCGCGATCGACGAGGCACACTGCGTCGCCCAGTGGGGCCAC
GACTTCCGGCCCGACTACCTGTCGCTGTCGATGCTCGGCGAGCGCTGGCCCGAGGTGCCCCGTGTCGCGCTGACGGCCAC
GGCGACGCGCGCCACCCACCGCGAGATCGTCGAGCGCCTCGGCCTGAGCGGCGCCCGCGACTTCGTCGCCAGCTTCGACC
GCCCCAACATCCAGTACCGCGTCGTGCCCAAGCGCGACCCGAAGAAGCAGTTGCTGCGCTTCTTGAAGGAGGAGCACGCG
GGCGACGCGGGGATCGTCTACTGCCTGTCGCGCAACGGTGTGGAGCGCACCGCCGAGTTCCTGTGCCGCAACGGCATCGA
GGCGGTGCCCTACCACGCGGGCCTGGACGCGGGCACGCGCGCGGCGCACCAGTCCCGCTTCCTGCGGGAGGAGGGGCTGG
TGGTGGTGGCCACGATCGCCTTCGGCATGGGCATCGACAAGCCGGACGTGCGCTTCGTCGCCCACCTCGACCTGCCCAAA
TCCGTCGAGGGCTACTACCAGGAGACCGGCCGCGCCGGGCGGGACGGCGAGCCCTCCACGGCCTGGCTCGCCTACGGCCT
CCAGGACGTCGTCCAGCAGCGCAAGCTGATCGAGGGCGGCGAGGGCGACCCCGCCTTCCAGCGCCGCGCGCGGGCCCACC
TCGACGCGATGCTGTCGCTGTGCGAGTCGGTGCGCTGCCGCAGGGCACAGCTGCTGGAGTACTTCGACCAGGAGCCCGCG
GCGGGCACCACGGACGTCGCCTGCGGGAACTGCGACACCTGTCTGACGCCCCCCGAGACGTGGGACGGCACGGTGCCCGC
CCAAAAGGCGCTCTCCTGTGTCGTACGGCTCAAGAGGGAGCGCGGCCAGAAGTTCGGCGCCGGCCAGATCGTGGACATTC
TGCTGGGCCGCAAGACCGCCAAGGTCATCCAGTTCGACCACGACGGGCTGAAGGTCTTCGGTATCGGCGCCGATCTGGGC
GAGGCCGAATGGCGCGGCATCGTCCGGCAGCTGCTCGCCCAGGGCCTCCTGGAGGTCGAGGGCGAGCACGGCACGCTGGT
GCTCACCGATGCCAGCGCGGAGGTGCTGCGCGGCGAGCGGGAGGTACGGCTGCGCAAGGACACGGCACCCGCCAAGGCCG
AGGGCGGCGGGCGCGGTGAGCGCTCCGGGCGCGGCGGCGGCAAGGCGGCAGCGGCGGCGGCCGACCTGCCGGAGGAGGCC
AAGCCGCTGTTCGAGGCGCTGCGCGCCTGGCGCGGCGAGCAGGCCAGGGAGCAGGGCGTCCCGGCGTACGTCGTCTTCCA
CGACGCGACGCTGCGCGAGATCGCCACCCAGCGGCCCGGCACGCTCGGCGAGCTGGGCGGAATCGGGGGCGTCGGCGAGA
AGAAGCTGGCCAACTACGGGGAAGGGATCTTGGAGGTGCTCGCGGGGCCGTCGGGGCCGGAGCCGGAACAGGAGCCCGAG
CCAGACCCGGAGCCGGAGCCCGAGCCCGCGTCCTAG

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(563-627)

DEAD/DEAH box helicase (DEAD)

(34-191)

Helicase conserved C-terminal domain (Helicase_C)

(229-335)

RecQ zinc-binding (RecQ_Zn_bind)

(348-415)

RQC domain (RQC)

(417-532)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

39.18

93.702

0.367