Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MM300_RS16555 Genome accession   NZ_CP093301
Coordinates   3481261..3482979 (+) Length   572 a.a.
NCBI ID   WP_255241967.1    Uniprot ID   -
Organism   Evansella sp. LMS18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3476261..3487979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM300_RS16535 (MM300_16465) - 3477119..3477751 (+) 633 WP_255241964.1 hypothetical protein -
  MM300_RS16540 (MM300_16470) dxs 3477762..3479651 (+) 1890 WP_255241965.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MM300_RS16545 (MM300_16475) - 3479653..3480465 (+) 813 WP_255241966.1 TlyA family RNA methyltransferase -
  MM300_RS16550 (MM300_16480) argR 3480781..3481230 (+) 450 WP_078597062.1 transcriptional regulator AhrC/ArgR -
  MM300_RS16555 (MM300_16485) recN 3481261..3482979 (+) 1719 WP_255241967.1 DNA repair protein RecN Machinery gene
  MM300_RS16560 (MM300_16490) spoIVB 3483121..3484395 (+) 1275 WP_255241968.1 SpoIVB peptidase -
  MM300_RS16565 (MM300_16495) spo0A 3484724..3485512 (+) 789 WP_078597059.1 sporulation transcription factor Spo0A -
  MM300_RS16570 (MM300_16500) steA 3485806..3486903 (+) 1098 WP_255241969.1 putative cytokinetic ring protein SteA -
  MM300_RS16575 (MM300_16505) - 3486869..3487528 (+) 660 WP_255241970.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 572 a.a.        Molecular weight: 64883.76 Da        Isoelectric Point: 4.7983

>NTDB_id=663345 MM300_RS16555 WP_255241967.1 3481261..3482979(+) (recN) [Evansella sp. LMS18]
MLMELSIRNFAIIDKITISFDEGLTVLTGETGAGKSIIIDAIGQLIGGRGSVDFVRHGSKRAEIEGLFSIDNGHEIHQLF
ADLGIETDEDETVVLRREITNQGKSICRINGKLVTLAILRQVGQTLVDIHGQHEHQQLLQSDKHILLLDRFAGETLDRAK
AEYRKLFDNYSRKREQLAQLTENAQEMIQRLDLIQYQFKEIEEAKLQPDEDVALLEEKKRLDHSEELYKTVHGAYDSLYG
DGKGLEWAMAAMNQIEEAAAIDDKLQPLKETIMNSYYLLEESAFSLRDYYEGIEFDPERLNEIESRLSEINQLKRKYGES
VNDILEHAAKLEEEMDTLNNRDERLQQWELELESIARDLLVEGKNLTELRQKEAENLKKEIQKQLKNLYMKDTEFKVEFL
EKDVQLHGLLNLEKRPPATKDGMDEAVFMVATNKGEPLKPLAKVASGGEISRMILALKTILSTHEGVTSLIFDEVDTGVS
GRVAQAIAEKIHQISFGSQVLCITHLPQVAAMADTHLFISKEVHNERMVTSVKPLVKEERVEEISRMISGAEITDLTRKH
AGELLSQAQQKG

Nucleotide


Download         Length: 1719 bp        

>NTDB_id=663345 MM300_RS16555 WP_255241967.1 3481261..3482979(+) (recN) [Evansella sp. LMS18]
TTGTTAATGGAGCTTTCAATCCGTAACTTTGCCATAATAGACAAAATTACTATATCGTTTGATGAAGGGCTTACTGTGCT
TACTGGGGAAACAGGTGCCGGTAAATCAATAATCATTGATGCCATTGGACAGCTCATTGGGGGCAGAGGTTCGGTAGACT
TCGTAAGGCACGGCAGTAAGCGGGCTGAAATAGAAGGACTGTTTTCAATAGACAATGGGCATGAAATACACCAGTTGTTC
GCAGATCTGGGTATAGAAACAGACGAAGATGAGACAGTTGTATTAAGACGGGAAATTACAAATCAGGGAAAAAGTATCTG
CCGTATCAATGGCAAGCTTGTAACCCTGGCCATTTTAAGGCAGGTCGGCCAGACTCTTGTTGATATTCATGGCCAGCATG
AACACCAGCAGCTTCTCCAGTCCGACAAGCATATTTTACTGCTCGACCGCTTTGCAGGGGAAACTCTTGACCGGGCGAAA
GCTGAGTATCGGAAGCTCTTTGATAACTATTCAAGAAAGCGGGAACAGCTCGCTCAGCTTACAGAAAACGCCCAGGAAAT
GATTCAGCGGCTGGACCTTATCCAGTATCAGTTTAAAGAAATAGAAGAAGCGAAATTGCAGCCCGATGAAGATGTTGCTC
TGCTCGAGGAAAAGAAGCGCCTTGACCATAGTGAGGAACTGTACAAAACCGTTCATGGGGCTTATGATTCACTTTATGGG
GACGGAAAGGGACTGGAGTGGGCTATGGCTGCCATGAACCAGATAGAAGAAGCTGCAGCCATTGATGACAAACTCCAGCC
TTTAAAAGAAACTATAATGAACAGTTATTATCTGCTGGAAGAATCGGCGTTTTCTTTAAGGGACTATTACGAAGGTATCG
AGTTCGACCCTGAAAGGCTTAATGAAATTGAAAGCAGGCTGAGCGAAATTAATCAGCTTAAACGCAAATATGGAGAATCA
GTAAACGACATTCTGGAGCATGCCGCTAAGCTTGAAGAAGAAATGGATACGCTGAATAACCGTGATGAACGTCTCCAGCA
GTGGGAACTGGAGCTGGAATCCATCGCAAGGGATCTGCTTGTGGAAGGAAAAAACCTGACAGAACTGAGGCAGAAAGAAG
CTGAAAACCTAAAAAAGGAAATTCAGAAACAGCTCAAAAACCTTTATATGAAGGATACGGAATTTAAGGTGGAATTCTTA
GAAAAGGATGTGCAGCTTCATGGGCTGTTAAATTTAGAAAAACGGCCGCCTGCAACAAAGGACGGAATGGATGAAGCGGT
GTTTATGGTGGCGACAAATAAGGGAGAGCCGTTGAAGCCTTTAGCAAAAGTGGCTTCCGGAGGGGAAATATCAAGGATGA
TTCTTGCTCTTAAAACAATCCTCTCCACTCATGAAGGGGTTACTTCCCTTATCTTTGATGAGGTTGACACTGGTGTGAGC
GGCCGTGTTGCCCAGGCGATAGCTGAAAAGATCCATCAGATCTCCTTTGGTTCACAGGTACTCTGTATAACACATCTCCC
TCAGGTGGCAGCAATGGCAGATACTCATTTATTTATATCCAAGGAAGTCCATAATGAGCGGATGGTTACCTCTGTAAAGC
CCCTTGTTAAAGAGGAGCGGGTTGAGGAAATCAGCAGGATGATTTCCGGAGCTGAGATTACCGACCTGACAAGGAAGCAC
GCCGGCGAACTTCTTTCACAGGCGCAGCAGAAAGGCTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.497

100

0.535