Detailed information    

insolico Bioinformatically predicted

Overview

Name   comZ   Type   Regulator
Locus tag   MM271_RS18525 Genome accession   NZ_CP093300
Coordinates   3745588..3745767 (-) Length   59 a.a.
NCBI ID   WP_084309385.1    Uniprot ID   -
Organism   Alkalihalobacillus sp. LMS39     
Function   repression of comG operon (predicted from homology)   
Competence regulation

Genomic Context

Location: 3740588..3750767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM271_RS18500 (MM271_18500) sigY 3740838..3741350 (+) 513 WP_243528843.1 RNA polymerase sigma factor SigY -
  MM271_RS18505 (MM271_18505) - 3741667..3741891 (+) 225 WP_279390765.1 sigmaY antisigma factor component -
  MM271_RS18510 (MM271_18510) - 3742035..3743003 (+) 969 WP_243528845.1 LCP family protein -
  MM271_RS18515 (MM271_18515) fabF 3743052..3744290 (-) 1239 WP_243528847.1 beta-ketoacyl-ACP synthase II -
  MM271_RS18520 (MM271_18520) - 3744325..3745263 (-) 939 WP_243528849.1 beta-ketoacyl-ACP synthase III -
  MM271_RS18525 (MM271_18525) comZ 3745588..3745767 (-) 180 WP_084309385.1 ComZ family protein Regulator
  MM271_RS18530 (MM271_18530) - 3745791..3746741 (-) 951 WP_243528851.1 BMP family ABC transporter substrate-binding protein -
  MM271_RS18535 (MM271_18535) - 3747020..3748609 (+) 1590 WP_243528853.1 peptide chain release factor 3 -
  MM271_RS18540 (MM271_18540) - 3748651..3748833 (-) 183 WP_243528855.1 hypothetical protein -
  MM271_RS18545 (MM271_18545) - 3748872..3749774 (-) 903 WP_243528856.1 NAD(P)-dependent oxidoreductase -
  MM271_RS18550 (MM271_18550) - 3749845..3750597 (-) 753 WP_243528858.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 59 a.a.        Molecular weight: 6796.05 Da        Isoelectric Point: 4.4797

>NTDB_id=663291 MM271_RS18525 WP_084309385.1 3745588..3745767(-) (comZ) [Alkalihalobacillus sp. LMS39]
MDPELKMKFMQIAMKHMPEAKALLDNKGIELSMDDLQPVLNMLLSVMNEAYELGKEENK

Nucleotide


Download         Length: 180 bp        

>NTDB_id=663291 MM271_RS18525 WP_084309385.1 3745588..3745767(-) (comZ) [Alkalihalobacillus sp. LMS39]
ATGGATCCAGAATTAAAAATGAAATTTATGCAAATTGCAATGAAGCATATGCCAGAGGCAAAGGCACTACTAGATAATAA
AGGAATCGAATTATCAATGGATGATTTGCAACCGGTGTTAAATATGTTATTAAGTGTGATGAATGAAGCATATGAACTTG
GAAAAGAAGAGAATAAGTAA

Domains

Predicted by InterproScan.

ComZ (ComZ)

(5-57)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comZ Bacillus subtilis subsp. subtilis str. 168

54.237

100

0.542