Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MM271_RS10180 Genome accession   NZ_CP093300
Coordinates   2075079..2076776 (+) Length   565 a.a.
NCBI ID   WP_243533645.1    Uniprot ID   -
Organism   Alkalihalobacillus sp. LMS39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2070079..2081776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM271_RS10160 (MM271_10160) - 2070549..2071160 (+) 612 WP_243533638.1 hypothetical protein -
  MM271_RS10165 (MM271_10165) dxs 2071169..2073058 (+) 1890 WP_243533640.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MM271_RS10170 (MM271_10170) - 2073062..2073883 (+) 822 WP_243533644.1 TlyA family RNA methyltransferase -
  MM271_RS10175 (MM271_10175) argR 2074611..2075060 (+) 450 WP_026674923.1 transcriptional regulator ArgR -
  MM271_RS10180 (MM271_10180) recN 2075079..2076776 (+) 1698 WP_243533645.1 DNA repair protein RecN Machinery gene
  MM271_RS10185 (MM271_10185) spoIVB 2076899..2078209 (+) 1311 WP_243533647.1 SpoIVB peptidase -
  MM271_RS10190 (MM271_10190) spo0A 2078475..2079266 (+) 792 WP_243533650.1 sporulation transcription factor Spo0A -
  MM271_RS10195 (MM271_10195) - 2079344..2079661 (+) 318 WP_243533651.1 hypothetical protein -
  MM271_RS10200 (MM271_10200) - 2079751..2080500 (+) 750 WP_243533653.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 64302.41 Da        Isoelectric Point: 5.2932

>NTDB_id=663279 MM271_RS10180 WP_243533645.1 2075079..2076776(+) (recN) [Alkalihalobacillus sp. LMS39]
MLVELSIKNFAIIDKLTIPFEKGLTVLTGETGAGKSIIIDAIGLLVGGRGSTEFVRYGTKRAEIEGLFSIHPGHLSIEKA
EEFGIDSDDDMIILRRDITANGKSVCRINGKMVTLSILREIGQTLVDIHGQHEHQVLMQPERHLELLDSMAKQELIQPFA
RYQELYSKYLSLSKQVKKMTENDQELTHRLDLLQYQLKEIEKAKLEPNEDERLAEEKYRLANSEKLYHLLQDAYNGLYGD
SKGLDWLTKTQAYMEEAASIDPQLEGLHETISNCFYLLEEATYSLRDRKDQVEFDPIRLDVIESRLNELNQLKRKYGSTV
EEILAYAENIAEEKDGLLHKDDRIQELEVKLSKTLEQLKWASEQLTMIRKKAATELIEAVHHELKALYMDKTRFAVSWKE
HETKESRFFEHGVDQVEFLLSTNPGEPVKPLAKVASGGEISRIMLAMKTIFSSSQGITSLIFDEVDTGVSGRVAQAIAEK
ILQISSNSQVFCITHLPQVAAMADQHLYIAKKEDKERTFTTVHPLSNEKRVEEIGRMISGVEMTELTREHAKELIEQAQK
IKSNS

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=663279 MM271_RS10180 WP_243533645.1 2075079..2076776(+) (recN) [Alkalihalobacillus sp. LMS39]
ATGCTTGTTGAATTATCAATCAAAAACTTTGCTATTATTGATAAACTTACGATTCCTTTTGAAAAAGGGTTAACCGTACT
AACAGGAGAAACGGGTGCTGGAAAATCAATTATTATTGATGCAATTGGTTTACTTGTTGGGGGAAGAGGATCAACCGAAT
TTGTTCGTTATGGAACAAAACGAGCTGAAATCGAAGGGTTGTTTTCCATCCATCCAGGTCACTTGTCGATAGAAAAAGCA
GAAGAATTTGGAATTGATAGCGATGATGACATGATCATTTTGCGTCGTGATATTACTGCAAATGGAAAAAGTGTTTGTCG
TATCAATGGTAAAATGGTTACATTGTCCATTTTGCGTGAAATCGGACAAACACTTGTTGATATTCATGGACAACACGAAC
ACCAAGTTTTAATGCAACCGGAACGACACCTTGAACTCCTTGATTCTATGGCTAAACAAGAATTAATTCAACCGTTCGCA
CGTTATCAAGAATTGTATTCTAAATATTTATCTTTATCTAAACAAGTAAAGAAAATGACTGAAAATGACCAAGAATTAAC
TCATCGTTTGGATTTACTGCAATATCAATTAAAAGAAATTGAAAAAGCAAAGTTAGAACCAAATGAAGATGAGCGGTTAG
CTGAAGAAAAATACCGATTGGCGAACAGTGAAAAATTATATCATCTACTACAGGACGCTTACAATGGTTTATACGGTGAT
AGCAAAGGATTGGATTGGTTAACAAAAACACAAGCTTATATGGAAGAGGCTGCTTCTATTGACCCACAGCTTGAAGGTTT
ACATGAAACGATAAGCAACTGTTTTTATTTATTGGAGGAAGCCACCTATTCACTTCGAGACCGTAAAGACCAAGTTGAAT
TTGATCCTATCCGTTTAGATGTTATTGAAAGTCGATTAAATGAATTGAATCAATTAAAACGAAAATACGGTTCGACGGTA
GAAGAAATTTTGGCTTATGCAGAAAACATAGCGGAAGAAAAAGATGGGCTTCTGCATAAAGATGACAGGATTCAAGAGCT
TGAAGTAAAACTATCTAAAACATTAGAGCAATTAAAGTGGGCTTCAGAACAATTAACAATGATTCGGAAAAAAGCAGCTA
CCGAGTTAATTGAAGCCGTACACCATGAATTAAAAGCTCTTTATATGGACAAAACAAGGTTTGCCGTTTCGTGGAAAGAA
CATGAAACGAAAGAATCCCGTTTTTTTGAGCACGGTGTAGACCAAGTTGAGTTTCTATTATCGACAAACCCTGGCGAACC
TGTCAAACCATTAGCGAAAGTGGCCTCTGGTGGAGAAATCTCCAGAATTATGTTAGCGATGAAAACGATATTTTCATCTT
CTCAAGGGATTACTTCACTTATCTTTGATGAAGTGGATACGGGAGTGAGTGGTCGTGTTGCTCAAGCGATTGCTGAGAAA
ATCCTGCAAATTTCAAGCAATTCTCAAGTGTTTTGTATTACGCACTTGCCTCAAGTCGCAGCAATGGCTGACCAGCATTT
ATATATTGCTAAAAAAGAAGATAAAGAAAGAACATTTACTACTGTTCATCCGCTTTCCAATGAAAAACGAGTGGAGGAAA
TTGGTAGAATGATTTCAGGTGTTGAAATGACGGAATTAACGAGGGAACACGCAAAAGAGTTAATAGAACAAGCCCAAAAA
ATTAAATCCAATTCTTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

55.749

100

0.566