Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG519_RS09335 Genome accession   NZ_CP108580
Coordinates   2186469..2188385 (+) Length   638 a.a.
NCBI ID   WP_405592590.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01190     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2181469..2193385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG519_RS09320 (OG519_09295) - 2182566..2182862 (+) 297 WP_405581116.1 YtxH domain-containing protein -
  OG519_RS09325 (OG519_09300) - 2183014..2184459 (+) 1446 WP_405581118.1 FGGY family carbohydrate kinase -
  OG519_RS09330 (OG519_09305) rcrP 2184688..2186424 (+) 1737 WP_405581121.1 ABC transporter ATP-binding protein Regulator
  OG519_RS09335 (OG519_09310) rcrQ 2186469..2188385 (+) 1917 WP_405592590.1 ABC transporter ATP-binding protein Regulator
  OG519_RS09340 (OG519_09315) - 2188527..2189474 (+) 948 WP_405581124.1 DUF3048 domain-containing protein -
  OG519_RS09345 (OG519_09320) - 2189527..2189967 (+) 441 WP_405581127.1 hypothetical protein -
  OG519_RS09350 (OG519_09325) - 2189976..2190263 (-) 288 WP_405581130.1 hypothetical protein -
  OG519_RS09355 (OG519_09330) - 2190403..2191527 (-) 1125 WP_405581132.1 hypothetical protein -

Sequence

Protein


Download         Length: 638 a.a.        Molecular weight: 69083.53 Da        Isoelectric Point: 5.8688

>NTDB_id=663269 OG519_RS09335 WP_405592590.1 2186469..2188385(+) (rcrQ) [Streptomyces sp. NBC_01190]
MGGPARFMGGGPVERSMDFTGSLKRLIGLMRPDRFFLWLMLALGVVSVSLAVTGPRILGHATDLIFAGVIGRQISGGSKR
EALDSLRAHGRDKIADVLSGIDFTPGQGMDFHAIANVLMLALGVYLVASVLSVFQMRCATRVINRTVYRLRGDVEAKLSR
LPLSYFDQQPRGEVLSRATNDIDNIGQSLQQTMGQLVNSLLTIIGVLAMMFWISWLLALVALVTVPVTLLVATRVGKRAQ
PQFVQQWKTTGVLNAHIEEMYTGHALVKVFGRAKESAEIFERENEALFRTGFRAQFISGTIQPMMMFIGNLNYVLVAVIG
GLRVASGALSIGDVQAFVQYSRQFSQPLTQVASMANLIQSGVASAERVFELLDANEQSDEPSVPARPAEVRGRVALEEVA
FRYEPERPLIENLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGTDISVMSREELRSSIGMVLQDTWLF
GGTIAENIGYGSDGATRADIEAAARAAHADRFIRTLPDGYDTVIDDEGAGVSAGEKQLITIARAFLSDPVILVLDEATSS
VDTRTEVLIQRAMAQLSHGRTSFVIAHRLSTIRDADVILVMESGAIVEQGTHAELLAAQGAYARLYAAQFAQAVVEVD

Nucleotide


Download         Length: 1917 bp        

>NTDB_id=663269 OG519_RS09335 WP_405592590.1 2186469..2188385(+) (rcrQ) [Streptomyces sp. NBC_01190]
ATGGGCGGTCCGGCCCGCTTCATGGGCGGCGGCCCGGTCGAGCGGTCGATGGACTTCACCGGCTCGCTGAAGCGGCTGAT
CGGCCTGATGCGGCCGGACCGCTTCTTTCTCTGGCTGATGCTGGCGCTCGGCGTCGTGAGCGTGTCGCTCGCGGTGACCG
GGCCGCGCATCCTGGGCCACGCCACCGACCTGATCTTCGCCGGGGTGATCGGCCGGCAGATCAGCGGCGGCTCCAAGCGG
GAGGCGCTCGACTCGCTGCGGGCGCACGGCCGGGACAAGATCGCCGACGTGCTCTCCGGCATCGACTTCACCCCCGGCCA
GGGGATGGACTTCCACGCCATCGCGAACGTGCTGATGCTGGCCCTCGGGGTGTATCTGGTGGCCTCGGTGCTGAGCGTCT
TCCAGATGCGCTGCGCCACCCGGGTCATCAACCGGACGGTCTACCGGCTGCGGGGCGACGTGGAGGCCAAGCTGTCCCGG
CTGCCGCTGTCGTACTTCGACCAGCAGCCGCGCGGCGAGGTGCTCAGCCGGGCCACCAACGACATAGACAACATCGGTCA
GAGCCTCCAGCAGACGATGGGCCAGCTCGTCAACTCGCTGCTGACGATCATCGGCGTGCTGGCGATGATGTTCTGGATCT
CCTGGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGGTCACGCTGCTGGTGGCGACCCGGGTGGGCAAGCGGGCGCAG
CCGCAGTTCGTGCAGCAGTGGAAGACCACCGGGGTGCTCAACGCGCACATCGAGGAGATGTACACCGGGCATGCGCTGGT
GAAGGTCTTCGGCCGGGCCAAGGAGTCCGCGGAGATCTTCGAGCGGGAGAACGAGGCGCTGTTCCGGACCGGTTTCCGGG
CGCAGTTCATCTCCGGCACCATCCAGCCGATGATGATGTTCATCGGCAACCTCAACTATGTGCTGGTCGCGGTGATCGGC
GGGCTGCGGGTGGCGTCGGGCGCGCTGTCCATCGGTGATGTGCAGGCCTTCGTGCAGTACTCGCGGCAGTTCAGCCAGCC
GTTGACGCAGGTGGCGAGCATGGCGAACCTGATCCAGTCCGGGGTCGCCTCGGCCGAGCGGGTCTTCGAACTCCTCGACG
CCAACGAGCAGTCGGACGAGCCTTCGGTACCGGCCCGGCCGGCCGAGGTGCGCGGCCGGGTGGCCCTTGAGGAGGTGGCC
TTCCGCTACGAACCGGAGCGGCCGCTCATCGAGAACCTGTCGCTGACGGTGGAGCCCGGCCACACGGTGGCGATCGTCGG
CCCGACCGGGGCCGGCAAGACCACCCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGTCCGGCGGGCGGATCACGCTCG
ACGGCACCGACATCTCGGTGATGTCCCGGGAGGAGCTGCGCTCCTCGATAGGGATGGTGCTCCAGGACACCTGGCTCTTC
GGCGGGACCATCGCGGAGAACATCGGCTACGGCAGCGACGGGGCCACCCGCGCGGACATCGAGGCGGCGGCCCGGGCGGC
GCACGCGGACCGTTTCATCCGTACCCTGCCGGACGGGTACGACACGGTGATCGACGACGAGGGCGCCGGGGTGAGCGCGG
GCGAGAAGCAGCTCATCACCATCGCCCGGGCGTTCCTCTCCGATCCGGTGATCCTGGTCCTGGACGAGGCGACCAGCTCG
GTCGACACCCGGACGGAGGTACTGATCCAGCGGGCGATGGCCCAGCTCAGCCACGGCCGGACCAGTTTCGTCATCGCGCA
CCGGCTGTCCACCATCCGGGACGCCGATGTCATCCTGGTGATGGAGTCCGGCGCGATCGTGGAGCAGGGCACGCACGCGG
AACTGCTCGCGGCGCAAGGGGCGTACGCCCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGTGGAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(55-348)

ABC transporter (ABC_tran)

(411-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.65

96.395

0.392