Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG519_RS09330 Genome accession   NZ_CP108580
Coordinates   2184688..2186424 (+) Length   578 a.a.
NCBI ID   WP_405581121.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01190     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2179688..2191424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG519_RS09290 (OG519_09265) - 2179699..2179878 (+) 180 WP_405581108.1 hypothetical protein -
  OG519_RS09295 (OG519_09270) - 2179983..2180672 (-) 690 WP_405581110.1 hypothetical protein -
  OG519_RS09300 (OG519_09275) xerC 2180961..2181887 (+) 927 WP_405581113.1 tyrosine recombinase XerC -
  OG519_RS09320 (OG519_09295) - 2182566..2182862 (+) 297 WP_405581116.1 YtxH domain-containing protein -
  OG519_RS09325 (OG519_09300) - 2183014..2184459 (+) 1446 WP_405581118.1 FGGY family carbohydrate kinase -
  OG519_RS09330 (OG519_09305) rcrP 2184688..2186424 (+) 1737 WP_405581121.1 ABC transporter ATP-binding protein Regulator
  OG519_RS09335 (OG519_09310) rcrQ 2186469..2188385 (+) 1917 WP_405592590.1 ABC transporter ATP-binding protein Regulator
  OG519_RS09340 (OG519_09315) - 2188527..2189474 (+) 948 WP_405581124.1 DUF3048 domain-containing protein -
  OG519_RS09345 (OG519_09320) - 2189527..2189967 (+) 441 WP_405581127.1 hypothetical protein -
  OG519_RS09350 (OG519_09325) - 2189976..2190263 (-) 288 WP_405581130.1 hypothetical protein -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 62243.50 Da        Isoelectric Point: 5.7816

>NTDB_id=663268 OG519_RS09330 WP_405581121.1 2184688..2186424(+) (rcrP) [Streptomyces sp. NBC_01190]
MLIRLLRSHLGAYKRPIGLLVLLQLVQTMATLYLPTLNADIIDNGVVKGDTGYIVHVGGAMLGVTVVQVICAIGAVFYGA
RTAMAVGRDIRASVFNQVQTFSAREVGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIVLALGQDVPLSSL
LLAVVPVLGISVSLIIRKLRPLFRTMQTRVDKVNRVLREQITGIRVIRAFVKDDYERRRFGESNDELTAVSLATGRLLAL
MFPVVMAVVNLSSVAVLWFGAHRIDSGGMQIGALTAFLSYLMQILMSVMMATFMFMMVPRAEVCAERIEEVLGTKSSVVP
PIAPVTTLARHGELELFEVDFAYPGAEAAVLRGVGLVARPGETTAVIGSTGSGKSTLLGLIPRLYDATGGQVLVDGEDVA
EIEPALLAETVGLVPQKPYLFSGTVATNLRYGKPDATDEELWHALEVAQAKEFVSGLEGGLDAAIAQGGTNVSGGQRQRL
AIARVLVRRPEIYLFDDSFSALDYATDAALRRALARETSDATVVIVAQRVSTIRDADRIVVLDEGRVVGTGTHAELMRDN
ETYREIVLSQLTEQEAAA

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=663268 OG519_RS09330 WP_405581121.1 2184688..2186424(+) (rcrP) [Streptomyces sp. NBC_01190]
GTGCTGATCCGACTCCTGCGCTCCCATCTGGGGGCGTACAAGCGCCCCATCGGCCTCCTGGTGCTGCTCCAGCTCGTGCA
GACCATGGCCACCTTGTACCTGCCGACCCTCAACGCGGACATCATCGACAACGGGGTGGTCAAGGGCGACACCGGCTACA
TCGTGCATGTGGGCGGCGCCATGCTCGGGGTCACCGTGGTCCAGGTGATCTGCGCCATCGGCGCGGTCTTCTACGGCGCC
AGGACCGCGATGGCGGTCGGCCGGGACATCCGCGCGTCCGTCTTCAACCAGGTGCAGACGTTCTCCGCCCGCGAGGTCGG
CCAGTTCGGCGCCCCCTCGCTGATCACCCGCACCACCAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACCTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCGTCCTGGCGCTCGGCCAGGACGTACCGCTCTCCTCGCTG
CTGCTCGCGGTGGTGCCGGTGCTGGGCATCTCGGTGAGCCTGATCATCCGCAAGCTGCGGCCGCTCTTCCGCACCATGCA
GACCCGGGTGGACAAGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGTATCCGGGTGATCAGGGCGTTCGTCAAGGACG
ACTACGAGCGGCGCCGCTTCGGTGAGTCCAACGACGAACTCACCGCGGTGTCGCTGGCCACCGGCCGGCTGCTGGCGCTG
ATGTTCCCGGTGGTGATGGCGGTGGTGAACCTCTCCAGCGTGGCGGTGCTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATTGGCGCACTGACCGCGTTCCTCAGCTATCTGATGCAGATCCTGATGTCGGTCATGATGGCCACCTTCA
TGTTCATGATGGTGCCGAGGGCCGAGGTGTGCGCCGAGCGCATCGAGGAGGTGCTGGGCACGAAGTCCAGCGTCGTACCG
CCGATCGCACCGGTCACCACCTTGGCCCGCCACGGTGAACTGGAGCTGTTCGAGGTCGACTTCGCCTATCCGGGCGCGGA
GGCGGCGGTGCTGCGCGGGGTGGGCCTGGTGGCCAGGCCCGGTGAGACCACCGCGGTGATCGGCTCGACCGGCAGCGGCA
AGTCCACCCTGCTCGGCCTGATCCCCCGGCTCTACGACGCCACCGGCGGGCAGGTGCTGGTGGACGGCGAGGACGTGGCG
GAGATAGAGCCGGCGCTGCTCGCCGAGACGGTGGGACTGGTCCCGCAGAAGCCGTACCTCTTCTCCGGCACGGTGGCCAC
CAACCTCCGCTACGGCAAACCCGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TGTCCGGCCTCGAAGGCGGCCTCGACGCGGCGATCGCCCAGGGCGGCACCAATGTCTCGGGCGGCCAGCGGCAGCGGCTG
GCCATCGCGCGGGTGCTGGTCAGACGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCGCTCGACTACGCCACCGA
CGCGGCGCTGCGCCGGGCGCTGGCCCGGGAGACCTCGGACGCCACGGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCA
GGGACGCCGACCGGATCGTGGTCCTGGACGAGGGCCGGGTGGTCGGCACCGGCACGCACGCGGAGCTGATGCGGGACAAC
GAGACCTACCGGGAGATCGTGTTGTCCCAGTTGACCGAGCAGGAGGCCGCGGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(353-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

42.259

94.983

0.401