Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MM221_RS18550 Genome accession   NZ_CP093299
Coordinates   3908498..3910228 (+) Length   576 a.a.
NCBI ID   WP_255235714.1    Uniprot ID   -
Organism   Salipaludibacillus sp. LMS25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3903498..3915228
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM221_RS18530 (MM221_18340) - 3904547..3905161 (+) 615 WP_255235710.1 hypothetical protein -
  MM221_RS18535 (MM221_18345) dxs 3905171..3907060 (+) 1890 WP_255235711.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MM221_RS18540 (MM221_18350) - 3907065..3907868 (+) 804 WP_255235712.1 TlyA family RNA methyltransferase -
  MM221_RS18545 (MM221_18355) argR 3908005..3908454 (+) 450 WP_255235713.1 transcriptional regulator AhrC/ArgR -
  MM221_RS18550 (MM221_18360) recN 3908498..3910228 (+) 1731 WP_255235714.1 DNA repair protein RecN Machinery gene
  MM221_RS18555 (MM221_18365) spoIVB 3910376..3911644 (+) 1269 WP_255235715.1 SpoIVB peptidase -
  MM221_RS18560 (MM221_18370) spo0A 3911941..3912735 (+) 795 WP_255235716.1 sporulation transcription factor Spo0A -
  MM221_RS18565 (MM221_18375) - 3913023..3913246 (+) 224 Protein_3627 iron chaperone -
  MM221_RS18570 (MM221_18380) - 3913336..3913683 (+) 348 WP_255235717.1 DUF2200 domain-containing protein -
  MM221_RS18575 (MM221_18385) - 3914375..3915031 (+) 657 WP_255235718.1 TraR/DksA C4-type zinc finger protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 65027.29 Da        Isoelectric Point: 4.9483

>NTDB_id=663258 MM221_RS18550 WP_255235714.1 3908498..3910228(+) (recN) [Salipaludibacillus sp. LMS25]
MLMELSIRNFAIIDEISISFEEGLIVLTGETGAGKSIIIDAIGLLIGGRGSVDFVRHGSKRAEIEGMFSVEASISKELAT
LLEDMGIASNEEPTIVLRREMTTQGKSICRVNGKLTTLALLREVGQLLVDIHGQHEHQKLLQADKHLTFLDRYAGTSLDK
TKREYEKLYDQFIKKREQLLQLSENEQQMAQRLDLIQYQFKEIENAKLELNEDKELDDERQKLNNSEALYKTVHGAYESL
YGEGKGLEWAMTAMNQIEEAASMDPELQPVKETIANCYYLLEEASFSLRDYYEGIAFDPDRLNTIEARLSEISQLKRKYG
DTVNDILEYAAAVEEEIDTLTNREQRLVQWEEELCSLVKDLTIEGEHLSQLRQKHAVKLKKAIQQQLKELYMKETVFDVA
FNKVSATSVTIQQLLKSSPFTKTGMDQVSFMVATNQGEPLKPVAKVASGGEISRMILALKAILAKHEGVTSIIFDEVDTG
VSGRVAQAIAEKIYRVSIGSQVLCITHLPQVAAMADTHLFIEKKQQNGRTQTVVRPLNEREQTEEISRMISGVEITDLTR
EHARELIIQAKETKLK

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=663258 MM221_RS18550 WP_255235714.1 3908498..3910228(+) (recN) [Salipaludibacillus sp. LMS25]
ATGCTGATGGAATTATCGATTCGCAACTTTGCAATTATAGACGAGATATCTATTTCTTTTGAGGAAGGCTTGATAGTACT
AACGGGAGAAACAGGTGCGGGAAAGTCCATTATTATTGATGCCATTGGCCTTCTCATTGGAGGACGAGGATCTGTTGATT
TCGTTAGGCATGGAAGTAAACGAGCAGAAATAGAAGGGATGTTTTCAGTCGAAGCATCGATTTCTAAGGAGTTAGCTACA
TTATTAGAAGATATGGGGATCGCTTCTAACGAAGAGCCAACCATCGTCTTAAGAAGAGAAATGACAACGCAAGGTAAAAG
TATTTGCAGAGTAAATGGGAAGTTAACGACGTTAGCTCTTCTTCGTGAAGTGGGACAATTACTTGTTGATATACATGGTC
AACATGAGCACCAAAAATTACTCCAAGCGGATAAACACTTAACATTTCTTGACAGGTATGCTGGTACCTCTTTAGATAAA
ACAAAACGTGAATATGAAAAGCTTTATGACCAATTTATTAAAAAACGAGAGCAACTTCTCCAGCTCTCAGAAAACGAACA
ACAAATGGCTCAGCGGCTAGATTTAATTCAATATCAATTTAAGGAAATAGAAAATGCTAAACTAGAATTGAATGAGGACA
AAGAACTTGATGATGAAAGGCAAAAATTAAACAATAGTGAAGCCCTTTATAAAACGGTTCATGGCGCTTACGAGTCGCTT
TACGGTGAAGGAAAAGGTCTTGAGTGGGCAATGACGGCCATGAATCAAATAGAGGAAGCAGCAAGCATGGATCCAGAATT
ACAGCCAGTAAAGGAGACCATTGCTAATTGCTATTACCTACTGGAAGAAGCATCATTTTCCTTAAGAGATTATTATGAAG
GTATCGCATTTGACCCTGATCGACTGAACACAATTGAAGCGCGACTAAGTGAAATTAGTCAATTAAAACGGAAATATGGT
GACACAGTAAACGATATATTAGAATATGCTGCGGCAGTTGAAGAAGAAATAGATACGCTCACAAACAGAGAGCAAAGACT
CGTACAATGGGAGGAAGAACTATGCTCCCTTGTAAAAGATTTAACGATTGAAGGGGAGCATTTATCCCAATTGCGACAAA
AACATGCAGTCAAATTAAAAAAAGCCATTCAGCAACAGCTAAAAGAGCTTTATATGAAAGAAACTGTGTTTGACGTTGCA
TTTAATAAAGTATCAGCGACTAGCGTGACTATTCAGCAGCTATTAAAATCCAGCCCATTTACTAAAACGGGGATGGATCA
GGTGTCGTTTATGGTGGCAACTAACCAAGGTGAGCCGCTAAAACCTGTTGCTAAAGTGGCTTCAGGCGGCGAAATTTCCC
GGATGATTTTAGCCTTGAAAGCCATTCTTGCAAAGCACGAAGGGGTGACATCGATTATTTTTGATGAAGTGGATACTGGT
GTAAGCGGACGGGTTGCCCAGGCGATAGCCGAAAAAATTTATCGCGTCTCAATTGGATCACAAGTTTTGTGTATTACTCA
TTTACCTCAAGTAGCAGCTATGGCAGATACACACTTGTTTATTGAAAAAAAACAGCAAAATGGAAGAACGCAAACGGTCG
TTCGTCCATTAAATGAGAGAGAACAAACTGAAGAAATAAGTCGCATGATATCTGGTGTTGAAATCACTGATTTAACGAGA
GAACATGCGCGAGAATTAATTATTCAAGCAAAAGAGACAAAACTAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.993

100

0.54