Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   MM221_RS11935 Genome accession   NZ_CP093299
Coordinates   2545042..2545998 (-) Length   318 a.a.
NCBI ID   WP_255234542.1    Uniprot ID   -
Organism   Salipaludibacillus sp. LMS25     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2540042..2550998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM221_RS11915 (MM221_11800) nagE 2540251..2541711 (+) 1461 WP_255234538.1 N-acetylglucosamine-specific PTS transporter subunit IIBC -
  MM221_RS11920 (MM221_11805) - 2542313..2543332 (-) 1020 WP_255234539.1 siderophore ABC transporter substrate-binding protein -
  MM221_RS11925 (MM221_11810) - 2543350..2544108 (-) 759 WP_255234540.1 ABC transporter ATP-binding protein -
  MM221_RS11930 (MM221_11815) - 2544102..2545052 (-) 951 WP_255234541.1 iron chelate uptake ABC transporter family permease subunit -
  MM221_RS11935 (MM221_11820) ceuB 2545042..2545998 (-) 957 WP_255234542.1 ABC transporter permease Machinery gene
  MM221_RS11940 (MM221_11825) - 2546783..2547592 (+) 810 WP_255234543.1 undecaprenyl-diphosphate phosphatase -
  MM221_RS11945 (MM221_11830) - 2547938..2549395 (+) 1458 WP_255234544.1 spore germination protein -
  MM221_RS11950 (MM221_11835) mgtE 2549581..2550942 (-) 1362 WP_255234545.1 magnesium transporter -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35010.14 Da        Isoelectric Point: 10.3750

>NTDB_id=663248 MM221_RS11935 WP_255234542.1 2545042..2545998(-) (ceuB) [Salipaludibacillus sp. LMS25]
MKKLIMMIVLLAIASFFSLFIGATSLSPQDLFNMSDQQSNIFWTSRVPRLISILIAGVGMSIAGLIMQQLTRNKFVSPTT
AGTMDSARLGILVSIMLFSSAAPLTRMLVAMAFAIAGTFLFMHILNRVKFKDPIFIPLVGLMFGNIIGSITTFFAYKHDL
IQNMTAWLQGNFATTMRGNYETLYMTVPLVLLAYLYANRFTVAGMGEDFSKNLGLNYKQVVNLGLVIVAVITSSIVLTVG
TIPFLGLVVPNIVTIYLGDNIRKNLPFTAVLGAIFVLMCDILGRLIIYPYEIPIGLTVGVIGSGLFLYLLLRRRKYGL

Nucleotide


Download         Length: 957 bp        

>NTDB_id=663248 MM221_RS11935 WP_255234542.1 2545042..2545998(-) (ceuB) [Salipaludibacillus sp. LMS25]
ATGAAGAAGCTCATAATGATGATCGTATTACTTGCTATAGCATCTTTTTTTTCACTTTTTATTGGGGCAACATCACTCTC
TCCTCAAGATTTGTTTAATATGTCTGATCAACAGTCTAACATTTTCTGGACGAGTCGCGTTCCCCGACTAATTAGTATAC
TTATCGCAGGCGTAGGAATGAGCATTGCAGGGCTGATAATGCAGCAACTCACACGAAACAAATTTGTTTCACCGACTACA
GCAGGAACGATGGATTCAGCACGCCTTGGTATCCTTGTCTCCATCATGTTGTTTTCATCAGCAGCTCCGCTCACAAGAAT
GCTTGTTGCAATGGCTTTTGCTATTGCTGGTACCTTCCTATTTATGCATATTCTTAATCGTGTAAAGTTTAAGGACCCTA
TTTTTATTCCCCTCGTCGGGTTAATGTTTGGAAACATAATCGGCTCCATCACGACATTTTTTGCATACAAACATGATCTT
ATTCAGAATATGACAGCCTGGCTGCAAGGAAACTTTGCTACTACGATGCGTGGAAACTATGAAACATTGTACATGACAGT
TCCCTTGGTCCTCCTGGCATATTTGTATGCAAATCGCTTTACTGTAGCTGGAATGGGCGAAGATTTTTCTAAAAATTTAG
GATTAAATTACAAACAAGTGGTGAACCTTGGACTCGTTATCGTAGCCGTTATAACATCATCAATTGTTTTAACTGTTGGC
ACCATCCCATTTCTCGGTCTTGTAGTTCCTAACATTGTCACGATCTATCTAGGAGATAACATCCGAAAAAATTTACCCTT
TACAGCTGTTTTAGGCGCTATATTTGTTTTAATGTGTGATATTCTCGGCCGACTTATCATTTATCCATATGAAATACCGA
TTGGATTGACAGTTGGCGTTATCGGTAGTGGTCTCTTCCTTTATTTGCTATTAAGGAGGAGAAAATATGGGCTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.665

100

0.528