Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MM221_RS09420 Genome accession   NZ_CP093299
Coordinates   2025609..2027012 (+) Length   467 a.a.
NCBI ID   WP_255237896.1    Uniprot ID   -
Organism   Salipaludibacillus sp. LMS25     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2020609..2032012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM221_RS09400 (MM221_09310) - 2020779..2021249 (+) 471 WP_255237892.1 CtsR family transcriptional regulator -
  MM221_RS09405 (MM221_09315) - 2021272..2021811 (+) 540 WP_255237893.1 UvrB/UvrC motif-containing protein -
  MM221_RS09410 (MM221_09320) - 2021814..2022884 (+) 1071 WP_255237894.1 protein arginine kinase -
  MM221_RS09415 (MM221_09325) clpC 2022908..2025370 (+) 2463 WP_255237895.1 ATP-dependent protease ATP-binding subunit ClpC -
  MM221_RS09420 (MM221_09330) radA 2025609..2027012 (+) 1404 WP_255237896.1 DNA repair protein RadA Machinery gene
  MM221_RS09425 (MM221_09335) disA 2026987..2028069 (+) 1083 WP_255237897.1 DNA integrity scanning diadenylate cyclase DisA -
  MM221_RS09430 (MM221_09340) - 2028267..2029367 (+) 1101 WP_255237898.1 PIN/TRAM domain-containing protein -
  MM221_RS09435 (MM221_09345) ispD 2029488..2030183 (+) 696 WP_255237899.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MM221_RS09440 (MM221_09350) ispF 2030180..2030653 (+) 474 WP_255238190.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 50736.08 Da        Isoelectric Point: 6.6190

>NTDB_id=663246 MM221_RS09420 WP_255237896.1 2025609..2027012(+) (radA) [Salipaludibacillus sp. LMS25]
MAKRKTKFVCQDCGYESTRWMGKCPGCQNWNTLVEEIESDSSARKRGFSTGERGTIKPEPITAIERTEEPRISTHINELN
RVLGGGIVPGSLVLVGGDPGIGKSTLLLQVSSTLSERKQRVLYISGEESTKQTKLRADRLGIGNDQLFVLAETDVDNIEK
VIEEMKPSLVIIDSIQTVYLESITSAPGSVSQVRECTSAFMRIAKTKGIAIFLVGHVTKQGSIAGPRILEHMVDSVLYFE
GERHHTYRILRAVKNRFGSTNEIGIFEMKEEGLEEVLNPSEIFLEERSTGAAGSAVVASMEGTRPVLVEIQSLISPTSFG
NPRRMATGIDHNRISLIMAVLEKRVGMMLQNHDAYVKVAGGVRLDEPSIDLAIAVSIASSFRDAPTAPADAIVGEVGLTG
EVRRVTRIEQRVTEAAKLGFKRVIIPKKNEGGWTIPSSIEVTGVSSVNEAIDVTLGGVSSGSPKFEL

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=663246 MM221_RS09420 WP_255237896.1 2025609..2027012(+) (radA) [Salipaludibacillus sp. LMS25]
ATGGCGAAAAGAAAAACAAAATTTGTGTGCCAAGATTGTGGTTATGAATCCACCCGATGGATGGGGAAATGCCCTGGCTG
CCAAAACTGGAACACACTAGTTGAAGAAATTGAATCAGATTCATCGGCCCGAAAACGAGGGTTCTCAACAGGGGAGAGGG
GGACGATAAAACCTGAACCGATTACAGCTATAGAACGAACTGAAGAACCTCGTATAAGCACTCATATTAATGAATTAAAT
CGTGTACTCGGTGGCGGAATTGTCCCTGGCTCACTCGTTTTAGTTGGAGGCGATCCGGGTATTGGAAAATCGACGCTTTT
ATTGCAAGTTTCCTCCACTCTTTCCGAGCGTAAACAACGCGTCCTCTACATTTCAGGTGAAGAATCAACAAAGCAGACGA
AATTACGTGCCGACAGACTCGGTATCGGCAATGACCAATTGTTTGTTTTAGCGGAAACAGATGTAGACAACATTGAAAAA
GTCATTGAAGAAATGAAGCCGTCTTTAGTTATAATTGACTCTATTCAGACTGTATACTTAGAAAGTATCACAAGTGCTCC
TGGAAGTGTCTCTCAAGTAAGAGAATGTACGTCAGCGTTTATGCGCATTGCAAAAACAAAAGGAATTGCTATTTTCCTTG
TGGGACATGTGACGAAACAAGGTTCTATTGCAGGTCCTCGAATATTAGAACATATGGTTGATTCCGTTCTATATTTTGAA
GGCGAACGCCATCATACGTATCGAATACTTCGTGCAGTAAAAAACCGTTTCGGCTCGACGAATGAAATCGGTATTTTTGA
AATGAAAGAAGAAGGACTTGAAGAAGTATTAAATCCTTCGGAAATATTTTTGGAAGAACGATCAACAGGGGCTGCTGGTT
CTGCGGTAGTGGCTTCTATGGAAGGGACGCGACCGGTTTTAGTAGAAATACAATCACTTATCTCACCTACAAGTTTCGGG
AATCCTCGACGTATGGCAACAGGTATTGACCATAATCGGATATCCCTTATCATGGCTGTACTTGAGAAAAGGGTTGGAAT
GATGCTTCAAAATCATGACGCCTATGTAAAAGTAGCGGGAGGTGTCCGACTTGATGAGCCATCAATTGACTTAGCCATAG
CGGTCTCAATTGCCTCAAGCTTCCGTGATGCCCCAACTGCCCCAGCAGATGCGATCGTAGGGGAGGTAGGGTTAACGGGT
GAAGTGAGAAGGGTGACACGGATTGAACAACGAGTAACTGAAGCGGCAAAGCTCGGATTTAAACGTGTGATCATCCCGAA
AAAAAATGAGGGGGGTTGGACGATCCCTTCAAGTATAGAAGTAACAGGCGTTAGTAGTGTAAATGAAGCGATTGATGTGA
CATTAGGAGGGGTATCCAGTGGATCACCAAAGTTTGAACTATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

73.799

98.073

0.724
  radA Streptococcus pneumoniae Rx1

59.645

96.574

0.576
  radA Streptococcus pneumoniae D39

59.645

96.574

0.576
  radA Streptococcus pneumoniae R6

59.645

96.574

0.576
  radA Streptococcus pneumoniae TIGR4

59.645

96.574

0.576
  radA Streptococcus mitis NCTC 12261

59.645

96.574

0.576
  radA Streptococcus mitis SK321

59.645

96.574

0.576