Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG452_RS24480 Genome accession   NZ_CP108569
Coordinates   5353171..5354904 (-) Length   577 a.a.
NCBI ID   WP_327297719.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01197     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5348171..5359904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG452_RS24470 (OG452_24455) - 5349838..5351070 (+) 1233 WP_327297717.1 sigma-70 family RNA polymerase sigma factor -
  OG452_RS24475 (OG452_24460) rcrQ 5351186..5353171 (-) 1986 WP_327297718.1 ABC transporter ATP-binding protein Regulator
  OG452_RS24480 (OG452_24465) rcrP 5353171..5354904 (-) 1734 WP_327297719.1 ABC transporter ATP-binding protein Regulator
  OG452_RS24485 (OG452_24470) - 5355046..5356527 (-) 1482 WP_327297720.1 FGGY family carbohydrate kinase -
  OG452_RS24490 (OG452_24475) - 5356558..5356857 (-) 300 WP_327297721.1 YtxH domain-containing protein -
  OG452_RS24510 (OG452_24495) - 5357554..5359143 (-) 1590 WP_327297722.1 tyrosine-type recombinase/integrase -
  OG452_RS24515 (OG452_24500) - 5359328..5359528 (+) 201 WP_327297723.1 DNA-binding protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62463.77 Da        Isoelectric Point: 6.7008

>NTDB_id=663233 OG452_RS24480 WP_327297719.1 5353171..5354904(-) (rcrP) [Streptomyces sp. NBC_01197]
MLISLLRTHLRPYKKPMAMLALLQLLQTCATLYLPTLNADIIDNGVVKGDSGYILSYGGLMIAISVVQVICNGGAVYFGA
RTASALGRDIRAGVFDRVQSFSAREVGHFGAPSLITRTTNDVQQIQMLVLMSFTLMASAPIMCVGAIVLALGQDVPLSLV
LIAVVPVMLVLVSLIVRRMRPLFRQMQVRLDTVNRVLREQITGNRVIRAFVKDAYEKERFKGANAELTEVSLGTARLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGAMQIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLSTDSSVVP
PLNPVTELARHGHLEIRGAGFKYPGAEASVLREVALEALPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGTDVR
ELDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALDVAQAKGFVEKLEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRTALRRETAQATVVIVAQRVSTIRDADRIVVMDEGQVVGTGRHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=663233 OG452_RS24480 WP_327297719.1 5353171..5354904(-) (rcrP) [Streptomyces sp. NBC_01197]
GTGCTCATATCACTTCTGCGGACCCATTTGCGTCCGTACAAGAAACCCATGGCCATGCTGGCGCTGCTTCAGCTGCTCCA
GACCTGCGCCACCCTCTATCTCCCGACGCTCAACGCGGACATCATTGACAACGGTGTCGTCAAGGGCGACTCGGGTTACA
TCCTGAGCTACGGCGGTCTCATGATCGCCATCAGCGTGGTTCAGGTGATCTGCAACGGCGGCGCCGTCTACTTCGGCGCC
AGGACCGCGTCCGCACTCGGCCGGGACATCCGCGCCGGTGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGTGAGGTCGG
GCACTTCGGCGCACCGTCCCTCATCACCCGGACGACCAATGACGTCCAGCAGATCCAGATGCTGGTCCTGATGTCGTTCA
CCCTGATGGCCTCGGCGCCGATCATGTGCGTGGGCGCCATCGTGCTGGCGCTCGGCCAGGACGTCCCGCTCTCGCTCGTA
CTGATCGCGGTCGTCCCGGTCATGCTCGTACTGGTCTCCCTGATCGTCCGGCGGATGCGGCCGCTCTTCCGGCAGATGCA
GGTCCGGCTCGACACGGTGAACCGGGTGCTGCGTGAGCAGATCACCGGCAACCGCGTCATCCGCGCGTTCGTGAAGGACG
CGTACGAGAAGGAGCGCTTCAAGGGCGCCAACGCCGAGCTGACCGAGGTCTCCCTGGGGACCGCCCGGCTGATGGCCCTG
ATGTTCCCGACGGTGATGACCGTGGTGAACGTGTCGTCGATCGCGGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGCGATGCAGATCGGGGCGCTCACGGCGTTCCTCTCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGGATCCAGGAGGTGCTCTCCACCGACTCCAGCGTGGTGCCG
CCGCTGAATCCCGTCACCGAGCTGGCCAGGCACGGCCATCTGGAGATCCGCGGGGCCGGGTTCAAGTACCCGGGCGCCGA
GGCGTCGGTGCTGCGGGAGGTCGCCCTGGAGGCGCTGCCCGGTGAGACCACCGCGGTGATCGGGTCGACCGGCAGCGGGA
AGTCGACGCTGCTCGGTCTCGTACCGCGGCTGTTCGACGCCACGGGCGGCGAGGTGCTGGTGGACGGCACGGACGTACGG
GAACTCGACCCCGTCCTGCTGGCGAAGACCGTGTCCCTGGTGCCGCAGAAGCCGTATCTGTTCTCCGGGACCGTCGCGAC
GAACCTGCGGTACGGGAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGATGTGGCGCAGGCCAAGGGGTTCG
TCGAGAAGCTCGAAGGCGGGCTGAACGCGCCGATCGCCCAGGGTGGCACCAACGTCTCCGGCGGGCAGCGCCAGCGGCTG
GCGATCGCCAGGACACTGGTCCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGACCGCGCTGCGGCGTGAGACCGCCCAGGCGACCGTGGTGATCGTCGCCCAGCGTGTCTCGACCATCC
GCGACGCGGACCGGATCGTCGTCATGGACGAGGGCCAGGTCGTCGGGACGGGCCGGCACCACGAACTGATGGACGGCAAT
GAGACATACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.137

100

0.406